CB304435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22 Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +++FRG + L +MS ++ +L A+ RR +RG ++ + E VRTH RNMII PEMIG + VYNGK F ++EI PEMIGH E+S + V HG G+GAT SS+F+PLK Sbjct: 15 EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFR---------DGKESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22 Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F ++G L L +M + +++ AR RR ++G+ K L+ G+ P +RTH R+ +I PEMIG G+YNGK F +V++ E IG +L EF+ S K V+HG PG+GAT S F+P+K Sbjct: 31 EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPGMGATRGSMFVPIK 162
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22 Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = -1 Query: 160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567 R ++F++ G +D L MS ++L+ + +RARR+ RG L+ +RTH R+MII+PEMIG I +YNGK F +VE++PE + HYL EF+++ + V HG GIGAT SS+F+PLK Sbjct: 11 RRKEEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIR---------SNGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.938e-21 Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F ++G L+ L +M + +++ +R RR RG+ L+ G++P +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 30 EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 ++++RG + L ++S +E +L +R RR +RG ++ ++ + +RTH R+MII+PEMIG I V+NGK F VE++PEMIGH EF+ + V HG G+GAT SS+F+PLK Sbjct: 15 EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEF----------KEGKKIRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.768e-20 Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F ++G L+ L +M + +++ +R RR RG+ K L+ G++ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 30 EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20 Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F ++G L+ L +M + +++ +R RR RG+ K L+ G+ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 30 EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20 Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F ++G L+ L +M + +++ +R RR RG+ L+ G++P +RTH R+ +I PEMIG G+YNGK F V + E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 30 EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20 Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = -1 Query: 160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558 ++F++RG+ + + + +++ L AR RR+ +R + L+ GE ++THLR+MII+PEM+G ++NGK + VE PEM+GHYL EF+++ V HG GIGAT S+++PLK Sbjct: 17 EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKA-------GETK--IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20 Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 ++++RG + L ++S +E +L +R RR +RG ++ ++ + +RTH R+MII+PEMIG I ++NGK F V+++PEM+GH EF+ + V HG G+GAT SS+F+PLK Sbjct: 15 EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEF----------KEGKKIRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136 The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bpback to top |