CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:159..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            ++++RG  +  L ++S +E  +L  +R RR  +RG       ++             ++ + VRTH R++II+PEMIG  I ++NGK F  V+++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   15 EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEF----------KEGKKVRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F ++G  L  L +M   + +++  AR RR   RG+      L+            G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   29 EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 51/133 (38.35%), Postives = 79/133 (59.40%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            +++++ G +++ L  MS DEL+ +  + ARR+  RG  R    +               + + VRTH R+MII+PEM+G  + +Y+GK F  VEI  E + HY  EF+++ K V HG  GIGAT SS+++PLK
Sbjct:   14 EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIA----------EGDGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAGIGATKSSKYVPLK 136          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METBF5.145e-2037.8830S ribosomal protein S19P OS=Methanosarcina barke... [more]
RS19_METVS6.720e-2034.0930S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METLZ8.776e-2038.3530S ribosomal protein S19P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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