CB304444

Overview
NameCB304444
Unique NameCB304444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304444_ssr174 microsatellite CB304444_ssr174:174..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.469e-35
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+N KV +VKASMENGVLTVT           KAIEISG
Sbjct:   40 ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.106e-34
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = -3
Query:  321 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 611
            ET+ FANARIDWKETP+AHVFKADLPG++         +G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+N KV+QVKA MENGVLTVT
Sbjct:   48 ETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.445e-34
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            + + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+N KVE+VKASMENGVL+VT           K+++ISG
Sbjct:   42 DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.445e-34
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = -3
Query:  270 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIS 611
            E S F + RIDWKETP+AHVFKADLPGL+         + R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+N K++QVKA+MENGVLTVT           K+IEIS
Sbjct:   29 ENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+N K++QVKA+MENGVLTVT           K I+ISG
Sbjct:   44 ENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.597e-33
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+N KVEQVKA MENGVLTVT           K IEISG
Sbjct:   40 ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.086e-33
Identity = 66/96 (68.75%), Postives = 79/96 (82.29%), Query Frame = -3
Query:  324 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTV 611
            ET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+N K+++VKA MENGVLTV
Sbjct:   38 ETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 70/115 (60.87%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S   NAR+DW+ETP+AHVFKADLPGL+         E  +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+NVK++QVKA+MENGVLTVT           K+I+ISG
Sbjct:   39 ENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.690e-31
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = -3
Query:  321 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 611
            ETS   NAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+NVK++QVKASMENGVLTVT
Sbjct:   41 ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = -3
Query:  321 TSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 608
            +S  ANAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+NVK++QVKASMENGVLTVT
Sbjct:   40 SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CB304444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP14_SOYBN8.469e-3563.4817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU1.106e-3469.0718.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP17_ARATH1.445e-3460.8717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA1.445e-3463.1618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP12_MEDSA1.887e-3460.8718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP15_SOYBN1.597e-3361.7417.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_HELAN2.086e-3368.7517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17B_ARATH7.927e-3360.8717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH9.690e-3164.9517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH3.682e-3065.6317.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304444 ID=CB304444; Name=CB304444; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACAT
TTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGA
ATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCC
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