CB304444

Overview
NameCB304444
Unique NameCB304444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304444_ssr174 microsatellite CB304444_ssr174:174..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = -3
Query:  267 NARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 593
            N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP   +V+QV ASM+NGVLTVT           KAI ISG
Sbjct:   39 NVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = -3
Query:  321 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 590
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WHRVERS GKF R+FRLP NV ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = -3
Query:  321 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 596
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WHRVERS GKF R+F+LP NV ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.957e-23
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  324 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTV 590
            AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDNV +E VKA +ENGVLT+
Sbjct:   71 ARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.691e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  267 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 488
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDN KV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = -3
Query:  321 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 596
            + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP N   + V A+++NGVLT+T
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = -3
Query:  324 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTV 611
            + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDN  ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.096e-17
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  321 ETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 611
            +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+  V+ V+ASM+ G+LTVT
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.575e-17
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = -3
Query:  321 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 611
            E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P    V +V A +++GVLTVT
Sbjct:   65 EPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = -3
Query:  324 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNVKVEQVKASMENGVLTV 596
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+NVKV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
The following BLAST results are available for this feature:
BLAST of CB304444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ4.213e-2657.1416.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN1.601e-2558.8922.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.601e-2556.5222.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.957e-2355.0622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN3.691e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS189_ORYSJ9.090e-2150.0018.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ3.233e-1845.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ2.096e-1747.9617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ3.575e-1745.7121.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH3.952e-1645.8315.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304444 ID=CB304444; Name=CB304444; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACAT
TTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGA
ATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCC
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