CB304444

Overview
NameCB304444
Unique NameCB304444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDN  V++V A   +GVLTVT
Sbjct:   58 DVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+N   + + A  ++GVLTVT
Sbjct:   49 DVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+N  +E + A  ++GVLTVT
Sbjct:   46 DVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++   +++ A  ++GVLTVT
Sbjct:   54 DVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDN  V+++ A  ++GVLTVT
Sbjct:   56 DVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+N   E++ A  ++GVLTVT
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:  324 SQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTV 605
            S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP  V+VEQ++AS++NGVLTV
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDN  ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  321 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNVKVEQVKASMENGVLTVT 596
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++   ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+N  VE + A  ++GVL VT
Sbjct:   59 DVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
The following BLAST results are available for this feature:
BLAST of CB304444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP22_MAIZE3.699e-1445.9817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOLPE4.831e-1443.6817.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA4.090e-1340.2317.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN4.090e-1339.0817.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ5.342e-1343.9618.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI9.112e-1344.3217.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP16_ORYSJ9.112e-1341.0016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP21_MAIZE1.190e-1244.8317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS178_ORYSJ1.554e-1237.8417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_IPONI2.030e-1240.4518.8 kDa class II heat shock protein OS=Ipomoea ni... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304444 ID=CB304444; Name=CB304444; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACAT
TTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGA
ATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCC
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