CB304444

Overview
NameCB304444
Unique NameCB304444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304444_ssr174 microsatellite CB304444_ssr174:174..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE   A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDN  V++V A   +GVLTVT
Sbjct:   49 DVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 581
            D KE P ++VF+ D+PGL+         +  +L I GER +++E++  K+ R+ER  GK +R+F LP+N   + + A  ++GVL+VT
Sbjct:   53 DVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 33/85 (38.82%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  321 KETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 575
            +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+ V  + V+A ++NGVLT+T
Sbjct:   59 RETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = -3
Query:  321 ETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 572
            E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDN  +E++ A+  +GVL VT
Sbjct:   52 EHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  321 ETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVT 572
            E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+N  ++++ A   +GVL VT
Sbjct:   51 EHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CB304444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP23_MAIZE3.462e-1245.9817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_SOYBN5.906e-1237.9317.9 kDa class II heat shock protein OS=Glycine ma... [more]
SP21_STIAU1.007e-1138.82Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS177_ARATH1.718e-1138.8217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS176_ARATH8.528e-1137.6517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304444 ID=CB304444; Name=CB304444; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACAT
TTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGA
ATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCC
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