CB304453

Overview
NameCB304453
Unique NameCB304453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 55/108 (50.93%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            +KGRLS++EI++MV+EAE++  ED++ K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A  +A++WLD NQ +E +E++ K+KE+E++CNPII  +YQ
Sbjct:  537 EKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 644          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.389e-27
Identity = 55/107 (51.40%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS  +I KMV++AEK+K +D++ K+++E+KN LENY ++++N++ D+KI SKL  +DK  IE   +  ++WL+SNQ AE DEF  K+ +LESI NPI++K YQ
Sbjct:  507 DKGRLSLKDITKMVEDAEKFKEQDQQQKERIESKNNLENYIFSVKNSINDQKIISKLSKSDKNIIESETESTLKWLESNQSAEKDEFNQKISDLESIVNPILSKFYQ 613          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP70_THEAN (Heat shock 70 kDa protein OS=Theileria annulata GN=TA11610 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.095e-27
Identity = 51/107 (47.66%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EI++MV+EAEKYK EDE+ ++ VE+++ LENY Y+M+NT+ ++++  KL   +       I  A++W+++NQLAE DE+E K+K +E +CNP++ K+YQ
Sbjct:  507 DKGRLSQEEIDRMVEEAEKYKEEDEKRRRCVESRHKLENYCYSMKNTLSEDQVKQKLGADEVDSALSTITDALKWVEANQLAEHDEYEDKLKHVEGVCNPLVTKLYQ 613          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 50/106 (47.17%), Postives = 79/106 (74.53%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D  RLSKD+I++M+ +AE++KAED+  ++++ AKN LE YA+N+++ V D    SKL P DK+ +  A++  +QWLDSN LA+ +EF  K++EL+  C+PI+AKM+
Sbjct:  506 DSDRLSKDDIDRMINDAERFKAEDDAQRERINAKNQLEGYAFNLKSAVDDAAAQSKLSPGDKETVTKAVNDVLQWLDSNSLADKEEFTYKLEELQKTCSPIMAKMH 611          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 52/106 (49.06%), Postives = 76/106 (71.70%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSKD+I++MV EAEKY+A+DE   ++V+AKN LE+YA+ ++NT+ +     K+   D K++E A  + I WLD++Q A  DE++ + KELE I NPI+ K Y
Sbjct:  504 DKGRLSKDDIDRMVSEAEKYRADDEREAERVQAKNQLESYAFTLKNTINEASFKEKVGEDDAKRLETASQETIDWLDASQAASTDEYKDRQKELEGIANPIMTKFY 609          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 52/106 (49.06%), Postives = 78/106 (73.58%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSK++I+KMV EAEK+KAEDE+  ++V+AKN LE+YA+ ++N+V +     K+   D +K+E A   AI WLD++Q A  +E++ + KELE + NPI++K Y
Sbjct:  504 DKGRLSKEDIDKMVAEAEKFKAEDEQEAQRVQAKNQLESYAFTLKNSVSENNFKEKVGEEDARKLEAAAQDAINWLDASQAASTEEYKERQKELEGVANPIMSKFY 609          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IEKMV EAEK+K EDE+  +++ +KN LE+ AY+++NT+ +   G KL+ ADK  +    ++ I WLDSN  A  +EF+ K+KEL+ I NPI++K+YQ
Sbjct:  503 DKGRLSKEDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISE--AGDKLEQADKDTVTKKAEETISWLDSNTTASKEEFDDKLKELQDIANPIMSKLYQ 607          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 55/108 (50.93%), Postives = 83/108 (76.85%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            D+ RLS ++IE+M+ +AEKY  ED++ K+KV+AKN LE+YAY+++N + D EK+G+KL   DK+KI +A+D+AI+WL+SN  AE++ F  K  ELE I  PI+ K+Y+
Sbjct:  538 DQNRLSPEDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKNQIGDKEKLGAKLSDEDKEKITEAVDEAIKWLESNAEAESEAFNEKKTELEGIVQPIMTKLYE 645          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25
Identity = 54/107 (50.47%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  504 DKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25
Identity = 54/107 (50.47%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS+ EI++MV EAEKY  EDE+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  504 DKGRLSQAEIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
The following BLAST results are available for this feature:
BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
BIP1_ARATH6.236e-2850.93Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
HS7C3_DICDI1.389e-2751.40Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP70_THEAN3.095e-2747.66Heat shock 70 kDa protein OS=Theileria annulata GN... [more]
HSP74_PARLI2.620e-2647.17Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HSP73_YEAST2.620e-2649.06Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP74_YEAST4.469e-2649.06Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP71_YEAST4.469e-2650.47Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]
GRP78_APLCA4.469e-2650.9378 kDa glucose-regulated protein OS=Aplysia califo... [more]
HSP75_DROME1.300e-2550.47Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]
HSP74_DROME1.300e-2550.47Major heat shock 70 kDa protein Bbb OS=Drosophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG
back to top