CB304453

Overview
NameCB304453
Unique NameCB304453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 49/107 (45.79%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  530 DQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 636          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 49/107 (45.79%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  529 DQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 49/107 (45.79%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  529 DQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 49/107 (45.79%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  530 DQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 636          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.318e-24
Identity = 49/107 (45.79%), Postives = 81/107 (75.70%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D+ RL+ +EIE+MV +AEK+  ED+  K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+++ I+WL+S+Q A+ ++F+ K KELE I  PII+K+Y
Sbjct:  529 DQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.217e-23
Identity = 47/108 (43.52%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            D+ RL+ ++I++M+++AEK+  ED++ K++VE++N LE+YAY+++N + D +K+G+KL   +K K+E AID++I+WL+ N  A+ +E++ + K+LE+I  P+IAK+YQ
Sbjct:  529 DQNRLTPEDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLYQ 636          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLS++EIE+MV EAEKYK EDE+  K++ AKN LE+YAY+++ T  +++   K++ + ++    A D  I WLD NQ A A+E++ K KELE   N ++  +Y
Sbjct:  504 DKGRLSQEEIERMVSEAEKYKEEDEKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKACDDTIAWLDENQTATAEEYDDKRKELEQAGNEVLKDLY 609          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 51/107 (47.66%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            D  RLS ++IE+M+ +A+K+ A+D+  K+KVE++N LE YAY M+  + D EK+G KL   DK  IE A+++AI+WL SNQ A  +E + + KELES+  PI++K+Y
Sbjct:  531 DHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 637          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 46/107 (42.99%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS+ +I++MV EAEKY+ EDE+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  505 DKGRLSQADIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSDADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 46/107 (42.99%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS+ +I++MV EAEKY+ EDE+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  505 DKGRLSQADIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSEADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
The following BLAST results are available for this feature:
BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
GRP78_MOUSE7.135e-2445.7978 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU7.135e-2445.7978 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN7.135e-2445.7978 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN7.135e-2445.7978 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_SPETR9.318e-2445.7978 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP7C_DROME1.217e-2343.52Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
HSP72_PICAN1.589e-2346.23Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP7D_CAEEL2.076e-2347.66Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP72_ANOAL2.076e-2342.99Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL2.076e-2342.99Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG
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