CB304453

Overview
NameCB304453
Unique NameCB304453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJD (Chaperone protein dnaK OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dnaK PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  310 LSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 618
            LS++EI  MV++AE +K ED++ K+ V+ +NA ++ A+ +  ++ +  +G K+  ADK+ I+ A+D   + L  NQ A  +E E KMK L  + + +   MY+
Sbjct:  501 LSEEEINNMVKDAELHKEEDKKRKEAVDVRNAADSLAHQVEKSLSE--LGEKVATADKENIQKALDDLRETL-KNQNASKEEIESKMKALSEVSHKLAENMYK 600          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  412 GRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAI 624
            GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+  A+
Sbjct:  512 GRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAALSDAL 582          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  412 GRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAI 624
            GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+  A+
Sbjct:  512 GRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAALSDAL 582          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP75_CANAL (Heat shock protein SSB1 OS=Candida albicans GN=SSB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = -2
Query:  370 GRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEF 624
            GRLS +EIEKM+ +AEK+K+ D+   K+ E K  LE Y  ++ +TV D  + +KL  + K KIE A+  A+Q L+  + + AD++
Sbjct:  512 GRLSTEEIEKMISDAEKFKSSDDAFAKRHEQKQKLEAYVASVESTVTDPVLSAKLKKSAKDKIEAALSDALQTLEIEE-SSADDY 595          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: DNAK_OENOB (Chaperone protein dnaK OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  310 GRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 624
            G LS+DEI KMV++AE  +  D++ K++V+  N ++   ++   T+ D  +G KL  +DKK ++DA+D+  +  DSN +    E   K   LE     +  K+YQ
Sbjct:  472 GNLSEDEINKMVKDAESNEEADKKKKEEVDLHNQVDQLIFSSEKTLSD--VGDKLGDSDKKPVQDALDELKKAKDSNNIETLKE---KKDALEKAAQALAVKLYQ 571          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: DNAK_NITMS (Chaperone protein dnaK OS=Nitrosopumilus maritimus (strain SCM1) GN=dnaK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  310 KGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 627
            K +LS++EIEK+ ++AEK+  ED++ K+K++ KN  E+Y Y     V  + +  K+      KI DA+ +  + LD     E +E + K++ L+SI N +  ++Y+
Sbjct:  482 KTKLSEEEIEKLKEDAEKFSEEDKKKKEKIDLKNEAESYIYTTEKLVNHD-LKDKISQEQGIKITDAVKEVKEVLDK----EPEELKPKLEALQSIVNEVTTELYK 582          
The following BLAST results are available for this feature:
BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
DNAK_CAMJD1.823e-1134.95Chaperone protein dnaK OS=Campylobacter jejuni sub... [more]
HSP76_YEAST3.109e-1149.30Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST3.109e-1149.30Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_CANAL4.061e-1141.18Heat shock protein SSB1 OS=Candida albicans GN=SSB... [more]
DNAK_OENOB9.047e-1134.29Chaperone protein dnaK OS=Oenococcus oeni (strain ... [more]
DNAK_NITMS9.047e-1133.02Chaperone protein dnaK OS=Nitrosopumilus maritimus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG
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