CB304453 | Citrus Genome Database

Overview


Name	CB304453
Unique Name	CB304453
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	631

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 66/107 (61.68%), Postives = 87/107 (81.31%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  506 DKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA NM++ V+DE +  K+  ADKKK+ D   + I WLD+N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  503 DKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 609

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 66/107 (61.68%), Postives = 88/107 (82.24%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MVQEAE+YKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI D  ++ + WL++NQLAE DEF+ K KELE++CNPII K+YQ
Sbjct:  508 DKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQ 614

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.933e-34
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNALE+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  509 DKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-33
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IE+MVQEAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  506 DKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  509 DKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  509 DKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  509 DKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSKD+I++MVQEAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  509 DKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

[Close]

BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = -2

Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IE+MVQEAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK+KI D  ++ I WLD NQ AE DE+  + KELE +CNPII K+YQ
Sbjct:  504 DKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLAGKISDEDKQKILDKCNEVISWLDKNQTAERDEYVHQQKELEKVCNPIITKLYQ 610

The following BLAST results are available for this feature:

BLAST of CB304453 vs. ExPASy Swiss-Prot

BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176


Match Name	E-value	Identity	Description
HSP7C_BOVIN	7.605e-34	61.68	Heat shock cognate 71 kDa protein OS=Bos taurus GN...	[more]
HSP71_CERAE	7.605e-34	63.55	Heat shock 70 kDa protein 1 OS=Cercopithecus aethi...	[more]
HS71L_MOUSE	7.605e-34	61.68	Heat shock 70 kDa protein 1-like OS=Mus musculus G...	[more]
HSP72_HUMAN	9.933e-34	60.75	Heat shock-related 70 kDa protein 2 OS=Homo sapien...	[more]
HSP7C_DANRE	1.694e-33	61.68	Heat shock cognate 71 kDa protein OS=Danio rerio G...	[more]
HSP72_RAT	2.213e-33	59.81	Heat shock-related 70 kDa protein 2 OS=Rattus norv...	[more]
HSP72_MOUSE	2.213e-33	59.81	Heat shock-related 70 kDa protein 2 OS=Mus musculu...	[more]
HSP72_CAPHI	2.213e-33	59.81	Heat shock-related 70 kDa protein 2 OS=Capra hircu...	[more]
HSP72_BOVIN	2.213e-33	59.81	Heat shock-related 70 kDa protein 2 OS=Bos taurus ...	[more]
HSP7C_ORYLA	2.890e-33	60.75	Heat shock cognate 71 kDa protein OS=Oryzias latip...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG