CB304453

Overview
NameCB304453
Unique NameCB304453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:145..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IE+MVQEAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK KI D  ++ I WLD NQ AE DE+E + K+LE +CNPII K+YQ
Sbjct:  506 DKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQ 612          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 65/107 (60.75%), Postives = 87/107 (81.31%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MVQEAE+YKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI D   + + WL++NQLAE +EF+ K KELE++CNPII K+YQ
Sbjct:  508 DKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQ 614          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 65/107 (60.75%), Postives = 87/107 (81.31%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MV +AEKYKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  ADKKKI +  ++A+ WL++NQLAE DEF+ K +ELE +CNPII K+YQ
Sbjct:  508 DKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSAVSDEGLKGKISDADKKKILNKCNEALSWLEANQLAEKDEFDHKRRELEQVCNPIITKLYQ 614          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.774e-33
Identity = 64/107 (59.81%), Postives = 87/107 (81.31%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MV EAEKY+ EDE+ K+ ++AKNALE+Y +NM++T++DEK+  K+  +DK+ I D  +  I+WLDSNQLA+ +E+E K KELE ICNPII K+YQ
Sbjct:  506 DKGRLSKEEIERMVNEAEKYRNEDEKQKETIQAKNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKLYQ 612          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MV +AEKYKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI D  ++ + WL++NQLAE DEF+ K KELE +CNPII K+YQ
Sbjct:  508 DKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKKKILDKCNELLSWLEANQLAEKDEFDHKRKELEQMCNPIITKLYQ 614          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.438e-33
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK++IE+MVQEAEKYKA+DE  + KV+AKN+LE+Y YNM+ TV+DEK+  K+   DKK I    ++ ++W+D NQ AE D++E K KELE +CNPII K+YQ
Sbjct:  513 DKGRLSKEDIERMVQEAEKYKADDELQRDKVQAKNSLESYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIITKLYQ 619          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.098e-32
Identity = 63/106 (59.43%), Postives = 85/106 (80.19%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSK+EIE+MV EAEKYKAEDEE   ++ ++NALE+YAYN+RN++ DEK+  K D ADKKK+EDA++  I WLD++Q A  +E+E   KELE++ NPI+ K+Y
Sbjct:  504 DKGRLSKEEIERMVNEAEKYKAEDEEATARITSRNALESYAYNLRNSLTDEKLADKFDAADKKKLEDAVNSTISWLDNSQEASKEEYEEHQKELEAVANPIMQKLY 609          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.098e-32
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSK+EIE+MV EAEKYK EDEE   +++AKN LE+YAYN+RNT+ D+K+  K+D ADK+ +  AID+ I WLD NQ    DE+E K KELE + NPI+ K+Y
Sbjct:  509 DKGRLSKEEIERMVAEAEKYKKEDEEAASRIQAKNGLESYAYNLRNTLNDDKVAGKMDAADKETLNKAIDETISWLDGNQEGAKDEYEHKQKELEGVANPIMTKLY 614          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.873e-32
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MV +AEKYKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI    ++ + WL++NQLAE DEF+ K KELE +CNPII K+YQ
Sbjct:  508 DKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSAVSDEGLQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITKLYQ 614          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.447e-32
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLSK+EIE+MVQEAE+YKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D   + I WLDSN LAE +EF  K +ELE +CNPII+ +YQ
Sbjct:  506 DKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDSNTLAEKEEFVHKREELERVCNPIISGLYQ 612          
The following BLAST results are available for this feature:
BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HSP7C_ICTPU2.890e-3360.75Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HS71L_RAT2.890e-3360.75Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_PIG2.890e-3360.75Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HSP7D_MANSE3.774e-3359.81Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HS71L_MACFA4.930e-3360.75Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HSP70_HYDMA6.438e-3358.88Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HSP71_PUCGR1.098e-3259.43Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP70_BLAEM1.098e-3259.43Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HS71L_BOVIN1.873e-3259.81Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP71_RAT2.447e-3260.75Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG
back to top