CB304453

Overview
NameCB304453
Unique NameCB304453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 60/106 (56.60%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSK+EIE+M+ EAEKYKAEDE    +++AKN LE+YAY+++NT+ + K+  ++   DKKKIED I + I WLD+NQ AE DE+E + KELE+I NPI+   Y
Sbjct:  374 DKGRLSKEEIERMLAEAEKYKAEDEAEASRIQAKNGLESYAYSLKNTITEGKL--QMSDDDKKKIEDKISEIISWLDNNQTAEKDEYESQQKELEAIANPIMQAAY 477          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 56/106 (52.83%), Postives = 84/106 (79.25%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRL+ ++IEKMV++AE +KA+DE  ++ VE+KN LENYAY +R+T+KD+KI +KL   D+K +E+  D+AI WL +N  A  +E+E  MK+LE++C+PII+K+Y
Sbjct:  505 DKGRLTAEQIEKMVKDAEMFKAQDEAQREVVESKNKLENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYEKAMKDLEAVCSPIISKVY 610          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 55/108 (50.93%), Postives = 88/108 (81.48%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EIE+MV+EAE++  ED++ K+K++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A+ +A++WLD NQ AE ++++ K+KE+E++CNPII  +YQ
Sbjct:  538 DKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQ 645          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 56/108 (51.85%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EIE+MV+EAE++  ED++ K+K++A+NALE Y YNM+N + D +K+  KL+  +K+KIE A  +A++WLD NQ AE ++++ K+KE+E++CNPII  +YQ
Sbjct:  538 DKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQ 645          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 56/108 (51.85%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EIE+MV+EAE++  ED++ K++++A+N+LE Y YNMRN + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++E K+KE+E++CNPII  +YQ
Sbjct:  165 DKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 272          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 56/108 (51.85%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EIE+MV+EAE++  ED++ K++++A+N+LE Y YNMRN + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++E K+KE+E++CNPII  +YQ
Sbjct:  539 DKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 646          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 55/108 (50.93%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            DKGRLS++EIE+MV+EAE++  ED++ K++++A+N LE Y YNM+N + D +K+  KL+  +K+KIE A+ +A++WLD NQ AE +++E K+KE+E++CNPII  +YQ
Sbjct:   41 DKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 148          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 53/108 (49.07%), Postives = 90/108 (83.33%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            +KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E K+KE+E++CNPI++ +YQ
Sbjct:  535 EKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQ 642          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 53/108 (49.07%), Postives = 90/108 (83.33%), Query Frame = -2
Query:  310 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMYQ 630
            +KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E K+KE+E++CNPI++ +YQ
Sbjct:  535 EKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQ 642          
BLAST of CB304453 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.621e-29
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  313 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEGKMKELESICNPIIAKMY 630
            DKGRLSK+EI+KMV EAEK+K EDE+   +V+AKN LE+YAY+++NT+ D ++  K+   DK+K+  AID+ I WLD++Q A  +E+E K KELES+ NPII+  Y
Sbjct:  505 DKGRLSKEEIDKMVSEAEKFKEEDEKEAARVQAKNQLESYAYSLKNTINDGEMKDKIGADDKEKLTKAIDETISWLDASQAASTEEYEDKRKELESVANPIISGAY 610          
The following BLAST results are available for this feature:
BLAST of CB304453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HSP70_PENCI5.640e-2956.60Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]
HS7C2_DICDI5.640e-2952.83Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
BIP_SPIOL5.640e-2950.93Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
BIP_SOLLC5.640e-2951.85Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP8_TOBAC5.640e-2951.85Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC5.640e-2951.85Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP3_TOBAC5.640e-2950.93Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
BIP3_MAIZE7.366e-2949.07Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE7.366e-2949.07Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP71_CANAL9.621e-2954.72Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304453 ID=CB304453; Name=CB304453; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACCGAAAAATATTCAT
TATATAAATTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAA
GGAAAAATTAATATTCATCCTAAGGCTAAAACAACATAAGATAAAAACCA
AACGTCCAGTTTTCCCACCGTCAAAAAGCCGACCTCCCACAAACACAACA
AAATAAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCA
CTGCCACCAGCTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACC
ACCAGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAA
GCTCCTTCATCTTGCCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTA
TCAAGCCATTGAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTC
AGCTGGATCAAGTTTGGAGCCGATCTTCTCGTCCTTGACAGTGTTCCTCA
TATTGTAGGCATAGTTTTCCAAGGCATTCTTGGCCTCGACCTTCTTCTTG
TGCTCCTCGTCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTC
AATTTCATCCTTTGACAATCTACCCTTATCG
back to top