CB304455

Overview
NameCB304455
Unique NameCB304455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_SYNE7 (Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTG R  +   V  LL+EI++ T KP+ VGFGIS  E  +QV  WGADGVIVGSA V  L      E+G++ +    + L+ A+
Sbjct:  176 VSVTGVTGMRQGMQSRVADLLQEIRQGTDKPIGVGFGISGAEQARQVRDWGADGVIVGSAFVNRL-----QEQGVEGVATLCRELRQAI 259          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_BACSK (Tryptophan synthase alpha chain OS=Bacillus clausii (strain KSM-K16) GN=trpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  266 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG-------EAQSPEEGLKELEKFAKSLKSALP 535
            VSS+GVTGAR ++   V+  L+ +KE++  P  VGFGIS  E V+++ G  ADGV++GSA+V+ +G       +A+S +E +KE+E++  SL    P
Sbjct:  172 VSSLGVTGARKTLHPQVEAFLKLVKEASPVPFVVGFGISSYEQVEEM-GRHADGVVIGSAIVEQIGLRCEALKQAESRDEAVKEIEQYVNSLLHPAP 267          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METJA (Tryptophan synthase alpha chain OS=Methanocaldococcus jannaschii GN=trpA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  278 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-------GEAQSPEEGLKELEKFAKSLK 535
            VS  G+TGAR  ++   + L++ +K+ +  P  VGFGISK EHV+++    ADG IVGSA+VK++       G+ +  E+ LKELE+F K+LK
Sbjct:  177 VSVTGITGAREKVAEETKELIKRVKKFSKIPACVGFGISKREHVEEITEI-ADGAIVGSAIVKIVEKHLDENGQIKDEEKFLKELEEFVKNLK 268          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.040e-13
Identity = 32/89 (35.96%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS+ GVTG ++ ++  ++ L   +K  T K + +GFGIS  E ++++ GW  +G+++GSA VK L     PE GL++++ F +  K+A+
Sbjct:  174 VSTTGVTGQKSQLTSQLKELTETVKTMTNKSIILGFGISTTEQIKEIKGWNINGIVIGSAFVKRL-SGNVPEAGLEQIQSFCQDAKNAI 261          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METTM (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 535
            VS +GVTGAR+ +      L+  +K + + PV VGFG+S+PEHV+ +A  GADGVIVGSA++ L+ +     E  L+E+ +  + +K+A
Sbjct:  172 VSVMGVTGARSRVEESTLELIERVKGAGSLPVMVGFGVSQPEHVRMLADAGADGVIVGSAIIDLISKNLDDRERMLQEIYEMVRKMKTA 260          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_SYNS9 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain CC9902) GN=trpA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = -1
Query:  290 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ----SPEEGL--KELEKFA 535
            VS  GVTG R+++   V+ L++ +K+S+  PVAVGFGIS  + V+QV  WGADG IVGSA+VK +  A     + E GL   EL K A
Sbjct:  181 VSVTGVTGERSTMETRVEGLVQALKQSSPVPVAVGFGISGVDQVRQVRSWGADGAIVGSALVKRMASASLGSVAAEAGLFCSELRKAA 268          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_ARCFU (Tryptophan synthase alpha chain OS=Archaeoglobus fulgidus GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.005e-12
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS+ GVTG R  IS      L+  K    KPVAVGFG+SK +HV+Q+   GADGV+VGSA V+L+ E    E   +++    ++L+S L
Sbjct:  161 VSTYGVTGERDRISPLAFEALKRAKGICRKPVAVGFGVSKADHVRQLISAGADGVVVGSAFVRLINE--KGERATEDIRALTENLRSGL 247          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METTH (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=trpA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.618e-12
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 535
            VS +GVTGAR+ +      L++ +K   + PV VGFG+S+PEHV+ +   GADGVIVGSA++ ++ G     E  L+ + + A +LK+A
Sbjct:  178 VSVMGVTGARSRVEDATIELIKRVKAEGSLPVMVGFGVSRPEHVRMLRDAGADGVIVGSAIIDVISGNLGDRELMLQRIHEMAGTLKAA 266          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_GRATL (Tryptophan synthase alpha chain OS=Gracilaria tenuistipitata var. liui GN=trpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.618e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV-KLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VSS GVTG R +    +Q L   IK +T K + +GFGI+ P+ + Q+  W  DG++VGSA++  ++GE   P++ L  L  F K LK ++
Sbjct:  174 VSSCGVTGLRDNFDVKIQHLANNIKSTTNKLIMLGFGINNPDQISQIINWNIDGIVVGSAIITHIVGEL--PQDMLNSLAHFCKKLKYSI 261          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSL (Tryptophan synthase alpha chain OS=Geobacter sulfurreducens GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTGAR+ +   V + +  I+E+ T PV VGFGIS P+   QVA   ADGV+VGSA+VKL     + E G +E+  F  +L+ A+
Sbjct:  176 VSVTGVTGARSGVEASVSSNVAAIREAITVPVVVGFGISTPDQAAQVAA-SADGVVVGSAIVKLFERFTAAELG-REVATFVSALREAI 262          
The following BLAST results are available for this feature:
BLAST of CB304455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
TRPA_SYNE78.139e-1446.07Tryptophan synthase alpha chain OS=Synechococcus e... [more]
TRPA_BACSK2.368e-1342.27Tryptophan synthase alpha chain OS=Bacillus clausi... [more]
TRPA_METJA3.093e-1344.09Tryptophan synthase alpha chain OS=Methanocaldococ... [more]
TRPA_PORYE4.040e-1335.96Tryptophan synthase alpha chain OS=Porphyra yezoen... [more]
TRPA_METTM5.276e-1342.70Tryptophan synthase alpha chain OS=Methanobacteriu... [more]
TRPA_SYNS96.890e-1348.86Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_ARCFU2.005e-1244.94Tryptophan synthase alpha chain OS=Archaeoglobus f... [more]
TRPA_METTH2.618e-1242.70Tryptophan synthase alpha chain OS=Methanobacteriu... [more]
TRPA_GRATL2.618e-1240.00Tryptophan synthase alpha chain OS=Gracilaria tenu... [more]
TRPA_GEOSL3.420e-1246.07Tryptophan synthase alpha chain OS=Geobacter sulfu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304455 ID=CB304455; Name=CB304455; organism=Citrus sinensis; type=EST; length=535bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACCAAGTTTTGCCATTAT
TTGAATATAGAATCCATCTTGCAAGGACTTGCAGAGTAAGCATTACACAA
TCTCCAAATCAGGATTTGGAGAATAGATTCTCTAATTTTATACTACATAT
TCAACTTTAGCATCAGGAAATACAGTTCTTTTTAAAATTTGATTCTCTAA
ATAGAAAATTGTTTTTAGAAGTACACTTGATCAAACATTATTGCTGATCT
ACATTACTGTTCTCACGGGAGAGCAGATTTTAACGATTTTGCGAATTTTT
CTAGCTCCTTCAGTCCCTCCTCAGGAGATTGTGCTTCACCCAATAGCTTC
ACCATAGCACTCCCAACAATCACACCATCAGCTCCCCATCCTGCTACTTG
TTGCACATGCTCAGGTTTTGATATGCCAAAGCCAACTGCAACGGGCTTAG
TTGTTGACTCTTTAATTTCCCTTAAAAGAGTTTGAACATGGCCACTAATA
GAAGCGCGAGCTCCAGTAACTCCAATTGAGCTTAC
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