CB304457

Overview
NameCB304457
Unique NameCB304457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:348..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  319 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKD 549
            HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  E L   ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   78 HNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGE-LGDSLQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I   F + +D+ +SV  AM EE   A+K
Sbjct:   77 HNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I   ++SG++++++V  AM EE   A+K
Sbjct:   77 HNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
The following BLAST results are available for this feature:
BLAST of CB304457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF5A2_YEAST4.706e-1246.75Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_CHICK3.984e-1147.37Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT8.875e-1143.42Eukaryotic translation initiation factor 5A-1 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304457 ID=CB304457; Name=CB304457; organism=Citrus sinensis; type=EST; length=549bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCATGTTTGAAACAACCAA
AAGGTGCTTCGAAGTGTATATACAGTCACGTTGGCGGATACAACTTCTGC
ACACCGAGAACAACCATGTTTCAACTTTCAAGCAATCAAACAGAATAAAA
ATATTGTCGATAGAAAACAATTAATAATATGGTAAGAGTCATTTTATATG
AAATGATGACATTCATCTTGAAACCGGACACCAGTAAGCTACACTACTAT
CCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGATCAAGCAAAAAGT
CTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTGCTCCTCTCCCA
TAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCTCAAATCCATCC
CTGATCTGTGAAAGAAGATTTTCATCAGTTGGAAGTCTCAGGTCATCCTT
GGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATCCTCAGAGATAT
CAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACATCACAGTTGTG
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