CB304468

Overview
NameCB304468
Unique NameCB304468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HW++WVGP IG  LA + ++
Sbjct:  173 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQ 275          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  299 QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 625
            +T     + +      AV  E+V+T  LV  V+A+ +D ++ +LG+ A + IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:  125 ETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFAS-MDSRQ-TLGSPAAM-IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  281 ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 607
            +L++      AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +  +HWV+WVGP++G  +A I+Y +     S
Sbjct:  121 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAAVAAILYFYLLFPNS 229          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  305 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 610
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  305 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 610
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = -1
Query:  299 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 577
            A+V EI+++F L++ +   A D +  + G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY VGP +G    G VY F
Sbjct:  161 ALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNF 251          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +   SG+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA + ++
Sbjct:  173 YTKGSGLGA------EIVGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQ 275          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = -1
Query:  299 NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 631
            N     A  ++SG     A+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++W GP IG   A   +++
Sbjct:  147 NANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQY 263          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = -1
Query:  305 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 628
            G    A A++ G    + +  EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A+V   S +W++HW++WVGP IG  LA I +
Sbjct:  162 GAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYH 275          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +   SG+GA      EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA + ++
Sbjct:  172 YTKGSGLGA------EIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQ 274          
The following BLAST results are available for this feature:
BLAST of CB304468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
PIP14_ARATH5.898e-1340.00Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
AQP6_RAT5.898e-1339.45Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP5_PIG5.898e-1336.36Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
PIP11_VICFA7.703e-1341.28Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH7.703e-1341.28Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
NIP42_ARATH7.703e-1340.86Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
PIP15_ARATH1.006e-1240.00Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ1.314e-1236.44Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE1.314e-1240.00Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ARATH1.314e-1239.09Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304468 ID=CB304468; Name=CB304468; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAATAGACATCAAAGCA
ATTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCATAATTA
TCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAACGGC
CATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGC
AAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGC
TTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGA
ACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAG
TAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGA
CACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGT
TGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTT
CCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAA
TGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAGATG
AGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTT
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