CB304468

Overview
NameCB304468
Unique NameCB304468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:518..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +    G+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  178 YTKGDGLGA------EIVGTFILVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQ 280          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  329 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 583
            W+++V EI++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +   W+Y++GP++G
Sbjct:  162 WHSLVIEIIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFLGPVLG 244          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +    G+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A+V      W++HW++WVGP IG  LA + ++
Sbjct:  176 YTKGDGLGA------EIVGTFILVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQ 278          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = -1
Query:  230 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF-FINQSHEQLPTTEY*AKSLPSM 577
            ++V E ++TF L++ +   A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPA++   + + WVY VGP+ G       Y    F N+   ++  +    KS+  M
Sbjct:  166 SLVLEFIITFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPISGASMNPARSLGPAMIGGEYRSIWVYIVGPVAGAVAGAWAYNIIRFTNKPLREITKSGSFLKSMNRM 280          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  302 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 610
            +    G+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  173 YTKGDGLGA------EIVGTFILVYTVFS-ATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQ 275          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = -1
Query:  281 FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 640
            F++ G T  + +L        A   E ++TF L++ V A A D +  ++G +A IA+G  V  NIL  G   G SMNP  + GPA+ S ++ + WVY V P +G      VY    +N S
Sbjct:  180 FMSGGVTIPSVSLGQ------AFALEFIITFILLFVVTAVATDTR--AVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDS 291          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  305 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 577
            ++V E V+TF L++ + A A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALV   +   WVY +GP  G       Y
Sbjct:  174 SLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAY 262          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  302 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 613
            A A+S G    + +  E+V TF LVYTV++ A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++      W  HW++WVGP  G  LA + ++
Sbjct:  173 ANAVSPGYTKGDGLGAEVVGTFVLVYTVFS-ATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQ 282          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = -1
Query:  299 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 583
            W+A+V EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP++G      VY +
Sbjct:  167 WHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVYTY 259          
The following BLAST results are available for this feature:
BLAST of CB304468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
PIP13_MAIZE1.112e-1139.09Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
NIP21_MAIZE1.112e-1137.65Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
PIP2_PEA1.897e-1139.09Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
NIP11_ORYSJ2.478e-1132.48Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_MAIZE3.236e-1139.09Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
NIP51_ARATH4.227e-1135.00Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP14_ORYSJ4.227e-1139.56Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
PIP16_MAIZE5.520e-1136.94Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NIP22_ORYSJ9.416e-1134.74Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304468 ID=CB304468; Name=CB304468; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAATAGACATCAAAGCA
ATTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCATAATTA
TCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAACGGC
CATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGC
AAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGC
TTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGA
ACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAG
TAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGA
CACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGT
TGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTT
CCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAA
TGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAGATG
AGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTT
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