CB304468

Overview
NameCB304468
Unique NameCB304468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:518..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  293 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 628
            G TT    LS+G G    ++ E+++TF LV+T++A+    +    G+IA +AIG  V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  146 GVTTVHGNLSAGHG----LLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 252          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  293 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 628
            G TT    L++G G    ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W NHW+YWVGP++G  LAG +YE+ F
Sbjct:  146 GVTTVHGNLTAGHG----LLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYVF 252          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L  GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGLA ++Y+F
Sbjct:  121 LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLASLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L +GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  121 LHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L  GV    A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASMNPA SF PA+++ ++ NHWVYWVGP+IGG L G+VY+F
Sbjct:  121 LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWVGPIIGGALGGLVYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  293 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 577
            AV+ E ++TF LV+ V A + DP +  +   AP+A+G  + A  L      GASMNPA SFGPA+V   W  HWVYWVGP+ GG LAGI+Y   F
Sbjct:  138 AVLIEALITFILVFVVKAVS-DPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHWVYWVGPIAGGLLAGIIYRLIF 231          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L +GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  119 LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 219          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L +GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  121 LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L  GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  121 LHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  293 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 586
            A   V+ E ++TF LV+ V+    D ++  +   AP+AIG  + A  L+   + GASMNPA SFGPA+V  +W + WVYWVGP++GG LAG VY  FF
Sbjct:  141 AGQGVMIEALITFILVFVVHGVC-DNRRSDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGNWTDQWVYWVGPIVGGILAGAVYRLFF 237          
The following BLAST results are available for this feature:
BLAST of CB304468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
AQP4_BOVIN6.506e-2045.54Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP4_MOUSE8.497e-2044.64Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
MIP_RABIT4.217e-1945.10Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_CAVPO4.217e-1944.12Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_RANPI5.507e-1946.08Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP_DROME5.507e-1949.47Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
MIP_RAT7.193e-1943.14Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE7.193e-1943.14Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_CANFA9.394e-1944.12Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP_AEDAE9.394e-1946.94Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304468 ID=CB304468; Name=CB304468; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAATAGACATCAAAGCA
ATTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCATAATTA
TCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAACGGC
CATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGC
AAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGC
TTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGA
ACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAG
TAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGA
CACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGT
TGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTT
CCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAA
TGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAGATG
AGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTT
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