CB304468

Overview
NameCB304468
Unique NameCB304468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:518..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L   V    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  121 LHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L  GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:  121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  299 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 604
            L  GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:  121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  296 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF 577
            A+  EIVMT  LV  V   A++ K  ++G +AP +IGF V  +ILAGG   GA MNPA +FGPA+++  WD HW+YW+GPL+ G   G++   F
Sbjct:  159 ALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLLIRLF 250          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  293 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 628
            G T  A  LS+G G    V+ E ++TF LV+ V+    D ++  +   AP+AIG  + A  LA   + GASMNPA SFGPA+V  ++ + WVYWVGP++GG +AG VY  FF
Sbjct:  130 GVTGIAPGLSTGQG----VLIEALITFMLVFVVHGVC-DNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGNYTDLWVYWVGPIVGGIVAGAVYRLFF 236          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  296 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF 577
            A+  EI++T  LV  V   A++ K  ++G +AP +IGF V  +ILAGG   GA MNPA +FGPA+V+  WD HW+YW+GPL+ G   G++   F
Sbjct:  157 ALGVEIILTILLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAGYWDFHWIYWLGPLLAGLFVGLLIRLF 248          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  293 NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 631
            +G      + SS +    AV+ E ++TF LV  V   + DP +  +   AP+A+G  + A  L      GASMNPA SFGPA+V   W +HWVYWVGP++G  +A ++Y+F F
Sbjct:  126 SGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWIDHWVYWVGPIVGAIVAALLYKFVF 237          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = -1
Query:  308 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIV 577
            A+  EI++T  LV  V   A++ K  ++G +AP +IGF V  +ILAGG+  GA MNPA +FGPA+++  WD HW+YW+GPL+ G   G++
Sbjct:  157 ALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLL 244          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -1
Query:  275 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 628
            G +    +L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIGF V    L    + G  +NPA SFG A+++ ++ +HWV+WVGP IGG LA ++Y+F    +S +
Sbjct:  123 GNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQDHWVFWVGPFIGGALAVLIYDFILAPRSSD 239          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = -1
Query:  302 FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLG--------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 640
            +++ GQ      ++  +  + A + E V+TF +VYTV+    DP+ G  G         +  + +G + GA +LA G+  GASMNPA SFGPA+VS  + N  VYW GP++G  +A +V++
Sbjct:  120 YISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAG-DPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQ 239          
The following BLAST results are available for this feature:
BLAST of CB304468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MIP_HUMAN1.602e-1843.14Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_SHEEP2.733e-1843.14Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN2.733e-1843.14Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP8_RAT4.662e-1847.87Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP_ANOGA6.089e-1845.54Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP8_NOTAL6.089e-1846.81Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
AQP_HAEIX2.314e-1740.71Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP8_MOUSE3.022e-1746.67Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
AQP1_PIG3.947e-1738.98Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
TIP51_ORYSJ5.155e-1736.36Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304468 ID=CB304468; Name=CB304468; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAATAGACATCAAAGCA
ATTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCATAATTA
TCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAACGGC
CATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGC
AAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGC
TTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGA
ACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAG
TAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGA
CACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGT
TGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTT
CCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAA
TGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAGATG
AGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTT
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