CB304468

Overview
NameCB304468
Unique NameCB304468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:518..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  296 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF 577
            A+V EI++T  L   V   A++ K  + G +AP +IGF V  +ILAGG   G  MNPA +FGPA+V+  W+ HW+YW+GPL+ G L G++   F
Sbjct:  157 ALVAEIILTTLLALAVCMGAINEK--TKGPLAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANHWNFHWIYWLGPLLAGLLVGLLIRCF 248          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  275 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 604
            L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:  129 LADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  275 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 604
            L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:  129 LADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  275 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 604
            L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:  129 LAHGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  272 ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW-SWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQ 607
            +L+ GV      + E  +TF L+  V +   D +K +LG  AP+A+G  +    LA   + G+SMNPA SFGPA+    +W NHWVYW GP++GG +AGI Y   F  +  E+
Sbjct:  137 SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAVNGDDNWANHWVYWAGPIVGGVVAGITYRALFRARKPEE 248          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  275 ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 607
            AL+ GV +   +  EI+ T  LV  V AT    ++  LG   P+AIGF V    L    + G  +NPA SFG ++++ ++ +HW++WVGP IG  LA ++Y+F    +S +
Sbjct:  130 ALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 240          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = -1
Query:  275 ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 607
            AL+ GV +   +  EI+ T  LV  V AT  D ++  LG   P+AIGF V    L    + G  +NPA SFG ++++ ++ +HW++WVGP IG  LA ++Y+F    +S +
Sbjct:  130 ALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  275 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 604
            L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IG  LA ++Y+F    +S +
Sbjct:  129 LARGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGSALAVLIYDFILAPRSSD 237          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = -1
Query:  302 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAL--------DPKKGSLGT-IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 628
            G+      ++  +  +   V E V+TF LVYTV+            D K+    T +  +A+G   GA +LA GA  GASMNPA SFGPA+VS  + N  VYW GP++G  +A +VY+
Sbjct:  127 GEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVYQ 244          
BLAST of CB304468 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  302 TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 622
            T    AL   VG     V E+++T   +  V+A+  D   G  G+ A + +GF +    L G  F GA MNPA SF PA+++ ++ NHWV+W GPL+G  LA ++YE
Sbjct:  115 TLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGRPGSAA-LPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRNFTNHWVFWAGPLLGAALAALLYE 220          
The following BLAST results are available for this feature:
BLAST of CB304468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
AQP8_HUMAN8.793e-1745.74Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
AQP1_PONAB8.793e-1740.00Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN8.793e-1740.00Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_MOUSE2.558e-1640.00Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP_CICVR5.699e-1640.71Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP1_SHEEP7.443e-1636.94Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN9.721e-1637.84Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_RAT1.270e-1539.09Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
TIP51_MAIZE3.694e-1538.98Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
MIP_CHICK3.694e-1539.25Lens fiber major intrinsic protein OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304468 ID=CB304468; Name=CB304468; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAATAGACATCAAAGCA
ATTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCATAATTA
TCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAACGGC
CATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGC
AAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGC
TTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGA
ACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAG
TAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGA
CACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGT
TGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTT
CCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAA
TGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAGATG
AGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTT
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