CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTE  VVS+DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ H+A  +
Sbjct:  231 MAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V++A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 70/101 (69.31%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVPT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SSVF+ KAGI+L+ KFVKL+SWYDNE+GYS RV+DLI ++
Sbjct:  228 MAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 73/105 (69.52%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF   + SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = -2
Query:  384 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 677
            MAFRVPT DVSVVDLT RL + A Y  IK AIKA ++G + GIL YTED+VVSTDFVGDS SS+FDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+
Sbjct:  304 MAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLL 401          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT DVSVVDLTV L+K  +Y++I A +K  +EG L GILGYT++ VVS+DF+ DSRSSVFDAKAGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  230 MSMRVPTTDVSVVDLTVNLKKPTTYEDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ ++A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 67/100 (67.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  378 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 677
            M+FRVPT++VSVVDLT  L+  A+Y+EI  A++  + G+LKG+LGYT++ VVS+DFVG+  SS+FDAKAGIAL K FVKLVSWYDNEWGYS RVVDL++H
Sbjct:  235 MSFRVPTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ ++A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT DVSVVDLTV LEK  +Y++I  A+K  SEG++KG+L YT++DVVS+DFV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H+AK
Sbjct:  233 MAFRVPTNDVSVVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_HUMAN2.278e-3468.57Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_CANFA2.278e-3469.52Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_DROHY2.975e-3469.31Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_RABIT3.885e-3469.52Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3PT_MACFA3.885e-3473.47Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PICAN5.074e-3468.93Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MOUSE5.074e-3468.57Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_MASBA5.074e-3467.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_CRIGR5.074e-3468.57Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3PC_CHLRE5.074e-3467.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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