CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-----LKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVPT +VSVVDLTV LEK ASYD IK AIK  +EGK     LKG+LGYTED VVSTDF G + +SVFDA AGIAL+  FVKLVSWYDNE GYS +V+DL+ HI
Sbjct:  229 MAFRVPTPNVSVVDLTVNLEKPASYDAIKQAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHI 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = -2
Query:  384 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 677
            MAFRVPT +VSVVDLT RL + ASY  IK A+KA ++G + GIL YTED VVSTDF GDS SS+FDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+
Sbjct:  327 MAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLL 424          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 65/103 (63.11%), Postives = 84/103 (81.55%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++ RVPT DVSVVDL VRLEK ASY++IK  ++  +EG+ KGI+ YT++DVVSTDF+ D+ S VFDAKAGI LS  FVKL++WYDNEWGYS RV +L+ ++AK
Sbjct:  229 LSMRVPTQDVSVVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++FRVPT+DVSV+DL VRLEK ASY++IK  +K  SEG  KGI+ YTE+ VVS DF+G   SS+FDA+AGI L+  FVKL+ WYDNEWGYS RV DL+V  A+
Sbjct:  229 LSFRVPTIDVSVIDLVVRLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLLVFAAE 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT +VSVVDLT + EK  SY+EI AA+K  +EG+LKGILGYT DDVVS DF  D RSS+FDA AGI L+  F K+VSWYDNEWGYS RV+DL++ +A
Sbjct:  232 MAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = -2
Query:  384 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 677
            MAFRVPT DVSVVDLT RL +   Y  IK AIKA ++G + GIL YTED+VVSTDF+ D+ SS+FDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+
Sbjct:  290 MAFRVPTPDVSVVDLTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLV 387          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 70/95 (73.68%), Postives = 77/95 (81.05%), Query Frame = -2
Query:  393 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVV 677
            MAF VPT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVV
Sbjct:  140 MAFHVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVV 234          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MA RVPT DVSVVDLT RL+K A+ DEIKAA+K  + G +KGIL YTED VVSTDF GD+ SS+FD+ A I+L+  FVKL++WYDNE+GYS RVVDLI +IA
Sbjct:  236 MANRVPTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 66/101 (65.35%), Postives = 82/101 (81.19%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVP  DVSVVDLT RL + ASY  IK ++K  + G +KGILGYTED VVS+DFVGD+ SS+FDA AGI+L+  FVKL+SWYDNE+GYS RV DL++++
Sbjct:  231 MAFRVPVADVSVVDLTCRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++FRVPT+DVSVVDL VRLEK A Y EI AAIK  SE   KGILG+T D VVSTDFVG + SS+FD+ AGI L+  FVKL++WYDNE+GYS RVVDL+ ++A+
Sbjct:  228 LSFRVPTLDVSVVDLVVRLEKPADYKEIVAAIKEASETTHKGILGFTSDSVVSTDFVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_HAEIN5.610e-3370.75Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PT_RAT5.610e-3372.45Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_AGABI5.610e-3363.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_LYOSH1.250e-3263.11Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P1_SYNY31.250e-3267.65Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3PT_BOVIN1.632e-3269.39Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_MELGA2.784e-3273.68Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BRUMA2.784e-3267.65Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PT_DANRE2.784e-3265.35Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_PLESA4.749e-3266.02Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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