CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT DVSVVDLT +  K  SY EI AA+K  SEG L GILGYT+++VVSTDF GD+ SS+FDA AGI L+  F K+V+WYDNEWGYS RVVDL++ + + +
Sbjct:  234 MAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMVQKE 338          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MA RVPT DVSVVDLT RL+K AS DEIKAA+K  + G +KGIL YTED VVS+DFVGD  SS+FDA A I+L+  FVKL++WYDNE+GYS RVVDLI + A
Sbjct:  236 MASRVPTPDVSVVDLTCRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT DVSVVDLT +  K  SY EI AA+K  SEG L GILGYT+++VVSTDF GD+ SS+FDA AGI L+  F K+V+WYDNEWGYS RVVDL++ + + +
Sbjct:  234 MAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMIQKE 338          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = -2
Query:  384 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 677
            MAFRVPT +VSVVDLT RL K ASY  I  A+KA ++G L GIL YTED VVSTDF G+  SS+FDAKAGIAL+  FVKLV+WYDNE+GYS RVVDL+
Sbjct:  335 MAFRVPTPNVSVVDLTCRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLL 432          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLE+ A+Y +I  AIKA SEG+LKGILGY ++++VS+D  G   +SVFDA+AGI+L+  FVKLVSWYDNE GYS +V DLI HI K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLERPATYKQICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYSNKVHDLIAHITK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = -2
Query:  396 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRV 677
            MAFRVPT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RV
Sbjct:  219 MAFRVPTPNVSVVDLTCRLEKAAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFKSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRV 312          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +AFRVPT +VSVVDLTVR +K A+Y+EI   +K  SE K+KGILGYTED+VVSTDF G   +S+FDAKAG++L+K F KL+SWYDNE GYS++V+DL+  +A
Sbjct:  229 IAFRVPTANVSVVDLTVRYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLVELVA 330          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 68/89 (76.40%), Postives = 73/89 (82.02%), Query Frame = -2
Query:  411 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWG 677
            MAFRVPT DVSVVDLT  LEK A Y++I AA+KA SEG +KGILGYTEDDVVS+DFV D  SS  DAKAGI LS  FVKLVSWYDNEWG
Sbjct:  224 MAFRVPTQDVSVVDLTCILEKPAKYEDIMAALKAASEGPMKGILGYTEDDVVSSDFVSDPASSTVDAKAGIMLSPTFVKLVSWYDNEWG 312          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLTV LEK A+  EI AA+K  SEG+LKGILGYTED VVSTDF G + +S++D+KAGI+L   F K+VSWYDNEWGYS +V ++   IA
Sbjct:  230 MAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVP  DVSVVDLTVRL+K  +YD+I  A+K  SE  LKGIL YT++ VVS+DF+G   SS+FDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  230 MAFRVPIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_ANASP4.749e-3263.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_ONCVO6.203e-3268.63Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P1_ANAVT6.203e-3263.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PT_MOUSE8.101e-3270.41Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_TRYBB1.058e-3166.99Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MESAU2.357e-3172.34Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BUCAP2.357e-3163.73Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_SCEVA3.079e-3176.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BACFR4.021e-3166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P_CHLPN6.858e-3163.11Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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