CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVP  DVSVV+LT RL +  SY EIK A+K  +EG +KG +GYTE  VVS+DF+GD+ SS+FDA AGI+ +  FVKL+SWYDNE+GYS RV DL++++
Sbjct:  231 MAFRVPVADVSVVELTCRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLT +L K A+YD+IKAA+K  SE   LK IL YTED VVSTDF+  + SS FDA+AGIAL+  FVKL++WYDNE+GYS RVVDLI ++ K
Sbjct:  230 MAFRVPTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 62/103 (60.19%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVP  +VSVVDLTVR +K A+Y EI   I+  S+ ++KGI+GYTED+VVSTDF G+  +S+FDAKAG++L+K FVKL++WYDNE GYS++V+DL+  ++K
Sbjct:  229 MAFRVPVSNVSVVDLTVRYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = -2
Query:  414 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEW 677
            MAFRVPT +VSVVDLT RLEK AS D IKAA+K  +EG LKGILGYTED VVSTDF+GDSRSS+FDA A I+L+  FVKLVSWYDNE+
Sbjct:  237 MAFRVPTPNVSVVDLTARLEKPASLDAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            M+ RVPT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD+ S +FDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI +IA
Sbjct:  230 MSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = -2
Query:  417 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNE 677
            MAFRVPT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SSVFDAKAGI+L+ KFVKL+SWYDNE
Sbjct:  218 MAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            M+ RVPT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD  S +FDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI +IA
Sbjct:  230 MSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 61/101 (60.40%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVP  DVSVVDLT  LEKDA+YDEI A IK  SE +LKGI+ YT +DVVS+DF+  + +  FD+KAGI L+ +FVKLV+WYDNE+GY+ ++V+L  ++
Sbjct:  231 MAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVELAKYV 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            M+FRVPT DVSVVDLT    +D S  EI AA+K  S+  +KGILGYT++++VS DF+ D+RSS++D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ H+A
Sbjct:  246 MSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLT    +D S  EI AA+K  S+  +K ILGYT++++VS DF+ DSRSS++D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ H+A
Sbjct:  246 MAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_ONCMY2.606e-3061.39Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_ECHMU2.606e-3066.35Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_BUCAI2.606e-3060.19Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_GLORO2.606e-3076.14Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_COCIM3.404e-3060.78Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P2_DROSU4.445e-3073.56Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_COCP75.806e-3060.78Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_GIALA1.868e-2860.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3PG_TRYCR3.186e-2856.60Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_TRYBB5.434e-2857.55Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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