CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.579e-43
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPTVDVSVVDLT RLEK A+YDEIKAAIK ESE  LKGILGYTEDDVVSTDFVGDSRSS+FDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI H+A
Sbjct:  232 MAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.740e-42
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVR+EK ASY+EIK AIKA SEG LKGI+GY E+D+VSTDF GDSRSS+FDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI H+ KTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.273e-42
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVP  DVSVVDLTVRLEK ASY++IKAAIK  SEG LKGILGYTED+VVSTDF+GDS SS+FDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VHIAK
Sbjct:  229 MAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.273e-42
Identity = 84/105 (80.00%), Postives = 95/105 (90.48%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVR+EK ASY++IK AIKA SEG LKGI+GY E+D+VSTDF+GDSRSS+FDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI H+ KTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.063e-42
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPTVDVSVVDLTV+L K+ +YDEIKAAIKA SEGKLKGILGYTED VVSTDF+GD+ SS+FDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+A
Sbjct:  228 MAFRVPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPTVDVSVVDLTVRL K A+Y++IKAAIK ESEG LKGILGY ++D+VSTDF GDSRSS+FDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI H+  T+
Sbjct:  201 MAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L+K+ +YDEIK  IK  SEGKLKG+LGYTED VVS+DF+GDSRSS+FDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 MAFRVPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SS+FDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 MAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SS+FDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 MAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.127e-40
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+VSTD  GD+RSS+FDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+IAK
Sbjct:  230 MAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_PETCR4.579e-4385.29Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE1.740e-4280.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI2.273e-4281.55Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3PC_MAIZE2.273e-4280.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ASHGO5.063e-4282.35Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PC_HORVU6.612e-4280.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA1.473e-4179.61Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P3_YEAST7.310e-4177.67Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST9.548e-4177.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_COCHE2.127e-4077.67Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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