CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S++ DAK+ + +S   VK+++WYDNEWGYS RVVD+   I
Sbjct:  231 MALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S++ DAK+ + +S   VK+++WYDNEWGYS RVVD+   I
Sbjct:  231 MALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S++ DAK+ + +S   VK+++WYDNEWGYS RVVD+   I
Sbjct:  231 MALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S++ DAK+ + +S   VK+++WYDNEWGYS RVVD+   I
Sbjct:  231 MALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S++ DAK+ + +S   VK+++WYDNEWGYS RVVD+   I
Sbjct:  231 MALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V LEK  + ++I + ++  S G   GILGYT++ +VS DF  D RSS+ D       +   VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            +A RVPT +VSVVDL V + +K  S +++ AA +  +EG LKGIL   +  +VS DF     S+  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  317 IALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  372 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 674
            + RVP    S+V+L   + +D + DE+  A +A ++G L G+L Y+ED +VS+D  G+  SS+FD++    +  + +K+V+WYDNEWG+S RV+D +  +A
Sbjct:  231 SIRVPVPVGSIVELNTTVARDVTRDEVLDAYRAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSEL-TRVDGRHIKVVAWYDNEWGFSNRVIDTLQLLA 330          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVP ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSS+ DA + + + +  VK+++WYDNEWGY  R+V+L   +A
Sbjct:  231 IAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  372 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 674
            A RVPT++VS+VDL+    +  + +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V +A
Sbjct:  234 AVRVPTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P2_STAAS3.304e-1746.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR3.304e-1746.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN3.304e-1746.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM3.304e-1746.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC3.304e-1746.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
E4PD_SHEFN3.304e-1741.67D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PB_PEA5.636e-1746.94Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_STRAU9.614e-1739.60Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P3_ANAVT9.614e-1741.75Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PP_RALEH1.256e-1643.56Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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