CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  372 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 674
            A RVPT++VS+VDL+    +  + +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V +A
Sbjct:  234 AVRVPTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVP ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSS+ DA + + + +  VK+++WYDNEWGY  R+V+L   +A
Sbjct:  231 IAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            ++ RVPT++V+ +DL+V L+K    +++   +K  +EG   G++GYT + +VS DF  D RSS+ D           VKL+ W DNEWG++ R++D  + + K +
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKRVDIEQVNRVLKQATEGSFSGVVGYTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAR 336          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  366 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKT 674
            A RVP    SV DLTV   +  S +E+K A  A + G  KG+L Y +  +VSTD VGD  +S+FDA        + VK+V WYDNEWGYS R++DL   I  +
Sbjct:  232 ALRVPVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDIVGDP-ASLFDAGLTRVCGPQ-VKVVGWYDNEWGYSNRLIDLATLIGSS 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            +A RVPT +VSVVDL V++ K    +E+  A +  +  +L GIL   +  +VS DF     SS  DA   + +    VK++SWYDNEWGYS RVVDL
Sbjct:  298 IALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDL 394          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CAVPO (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Cavia porcellus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = -2
Query:  498 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDS 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+
Sbjct:   63 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGSLKGILGYTEDQVVSCDFNSDT 122          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            +A RVPT +VSVVDL V++ K    +E+  A +  +  +L GIL   ++ +VS DF     SS  D+   + +    VK+++WYDNEWGYS RVVDL
Sbjct:  300 IALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDL 396          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL++ + KD +  EI   +   SE  LK ILGYTE  +VS DF  D RS + D           VKL+ W DNEWG++ R++D   ++A
Sbjct:  233 IAVRVPTINVTAMDLSITVSKDVTIQEINDCLLKASETNLKDILGYTEAPLVSIDFNHDPRSCIIDGTQTRVSDGNLVKLLVWCDNEWGFANRLLDTSFYLA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VS+VDL V LE++ +  ++  A K      L G+L   E  +VS DF  +  S++ D+++ + + +  VK+++WYDNEWGYS RVV++ V I +
Sbjct:  231 MALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFK---NADLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVAVKIGQ 330          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V LEK      +   +++ + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_RALEH1.256e-1643.56Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3P3_ANASP1.256e-1641.75Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
E4PD_SHEPW1.256e-1636.19D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_STRAE2.142e-1645.63Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_MAIZE2.142e-1645.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_CAVPO2.797e-1671.67Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_PEA2.797e-1643.30Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_PSYIN2.797e-1641.18D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
G3P2_STAES3.653e-1640.78Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
E4PD_SHEB23.653e-1639.58D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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