CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            +A RVPT +VSVVDL V +EK   + +++  A +  + G LKG+L   +  +VS DF     SS  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  316 IALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDL 413          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRLEKDA-SYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            +A RVPT +VSVVDL + +EK   + +++  A +  + G +KGIL   +  +VS DF     S+  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  313 IALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 410          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIIDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            +A RVPT++V+ +DL+V +  D   + +  A+KA+++ +L+GIL YT + +VS DF  D  S + D        K+ +KL+ W DNEWG++ R++D
Sbjct:  233 IAVRVPTINVTAMDLSVTVNTDVDLNAVNNALKAQAKDRLEGILSYTAEPLVSIDFNHDPHSCIIDGTQTRVSHKRLIKLLVWCDNEWGFANRMLD 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ALTMD (D-erythrose-4-phosphate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            +A RVPT++V+ +DL+V L+   + +++  A+++   G+L+GIL YTE+ +VS DF  D  S + D        K+ VK + W DNEWG++ R++D
Sbjct:  232 IAVRVPTINVTAMDLSVTLQSKVTIEQVNQALRSAKAGRLQGILDYTEEPLVSVDFNHDPHSCIVDGTQTRVSHKQLVKTLVWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEI-----KAAIKAESEGK--LKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP  D S++DLTV + K  +S +E+     +AA K    GK  LK IL Y ED +VSTD VG+  S++FDA     +    V + +WYDNEWGYS R+ DL++++A+
Sbjct:  231 ARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVIDN-LVHIAAWYDNEWGYSCRLRDLVIYLAE 339          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=epd PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            ++ RVPT++V+ +DL+V L K    + +   +K  +EG   G++G+T + +VS DF  D RSS+ D           VKL+ W DNEWG++ R++D  + + K +
Sbjct:  232 ISVRVPTINVTAIDLSVTLNKRVDIETVNQVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAK 336          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PB_SPIOL4.772e-1644.90Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH8.139e-1642.86Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
E4PD_SHESA8.139e-1638.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSEHT8.139e-1638.54D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_ALTMD8.139e-1638.54D-erythrose-4-phosphate dehydrogenase OS=Alteromon... [more]
E4PD_SHESR1.063e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESM1.063e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEON1.063e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_AQUAE1.388e-1544.55Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
E4PD_SHEPA1.388e-1535.24D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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