CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V L K      +   ++  + G+  GILGYT++ +VS DF  D RSS+ D       + + VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = -2
Query:  387 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 677
            MA RVPT +VS+VDL V LE++ +  ++  A K      L G+L   E  +VS DF  +  S++ D+++ + + +  VK+++WYDNEWGYS RVV++
Sbjct:  231 MALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFK---NADLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEV 324          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            ++ RVPT++V+ +DL+V L K    + +   +K  +EG   G++G+T + +VS DF  D RSS+ D           VKL+ W DNEWG++ R++D  + + K +
Sbjct:  232 ISVRVPTINVTAIDLSVTLNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAK 336          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            + RVPT +VSV+DL    ++  S +EI  AI A +  +LKGILG+T+   VS DF  +  SS F       +    V+++SWYDNEWG+S R+ D  V + K
Sbjct:  232 SIRVPTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTAVAMGK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 39/103 (37.86%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVP  + S+ +  V L+ D +  ++ AA +  + G+L+G+LG T DDVVS+D +GD  S+  D ++   +S    K+++WYDNE+G+S R++D+  +I +
Sbjct:  234 MAIRVPVPNGSITEFVVDLDDDVTESDVNAAFEDAAAGELEGVLGVTSDDVVSSDILGDPYSTQVDLQSTNVVS-GMTKILTWYDNEYGFSNRMLDVAEYITE 335          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  372 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 674
            A RVP +  S  DLT   + + + + I AAIK  + G+    L Y+E+ +VSTD V DS  S+FDA     +S   VK+VSWYDNEWGY+ +++ L   +A
Sbjct:  232 ALRVPVITGSATDLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYTCQLLRLTELVA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            +A RVPT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S + D           VK++ W DNEWG++ R++D
Sbjct:  232 IAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            +A RVPT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S + D           VK++ W DNEWG++ R++D
Sbjct:  232 IAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++ RVPT++V+ +DL+V L+K    D +   +   + G  +G++GYT   +VS DF  D RSS+ D           VKL+ W DNEWG++ R++D  + + K
Sbjct:  232 ISVRVPTINVTAIDLSVTLDKRVDIDTVNQVLSQAANGSYQGVVGYTNAPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIK 334          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_SHESW1.813e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC1.813e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P2_STAEQ2.368e-1541.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
E4PD_SHEHH2.368e-1535.24D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_XANFL3.093e-1542.16Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_HALVA3.093e-1537.86Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_CORGL3.093e-1542.57Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
E4PD_AERS43.093e-1537.50D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH3.093e-1537.50D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_SHELP5.276e-1535.92D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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