CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +D++V L        I + ++  ++G+  GILGYT++ +VS DF  D RSS+ DA          VKL+ W DNEWG++ R++D
Sbjct:  232 ISVRVPTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSSIVDATQTRVSDGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  411 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWG 677
            +A RVPT +VSVVDL V++EK    +EI  A K  + G L G+L  +++ +VS DF     SS  D+   + +    VK+V+WYDNEWG
Sbjct:  226 IALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  387 RVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 668
            RVP++DVS++DL++ LEK A  D I   +   S+G LKG+L     + VS+DF+ +  S +        L +  VK++ WYDNEWGYS R+VD+
Sbjct:  233 RVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDM 325          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L V L+K+ S DEI +A+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  233 AQRVPVPTGSVTELVVTLDKNVSVDEINSAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  387 RVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 668
            RVP++DVS++DL++ LEK A  D I   +   S+G LKG+L     + VS+DF+ +  S +        L +  VK++ WYDNEWGYS R+VD+
Sbjct:  233 RVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDM 325          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_SHEDO8.999e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_STRP81.535e-1445.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP61.535e-1445.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP31.535e-1445.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP11.535e-1445.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ1.535e-1445.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_SCEVA1.535e-1443.82Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_HELPJ2.618e-1442.55Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_STRPY3.420e-1444.76Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_HELPY3.420e-1442.55Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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