CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 36/105 (34.29%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            ++ RVPTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S++ D       + + VK++ W DNEWG++ R++D  + +  TQ
Sbjct:  237 ISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAMQATQ 341          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 36/105 (34.29%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            ++ RVPTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S++ D       + + VK++ W DNEWG++ R++D  + +  TQ
Sbjct:  237 ISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAMQATQ 341          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_COLP3 (D-erythrose-4-phosphate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = -2
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAE-SEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            +A RVPT++V+ +DL++ +  D    +I  AI+A  S   L G+L YTE+ +VS DF  D  S + D        K+ +K++ W DNEWG++ R++D
Sbjct:  233 IAVRVPTINVTAMDLSLTVNNDVCICDINQAIQAATSNHDLYGVLSYTEEPLVSVDFNHDPHSCIVDGNQTRVSHKRLIKMLVWCDNEWGFANRMLD 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALTY (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhimurium GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALTI (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhi GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALPB (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKTVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_VIBCH1.697e-1334.29D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC31.697e-1334.29D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_COLP31.697e-1338.14D-erythrose-4-phosphate dehydrogenase OS=Colwellia... [more]
E4PD_SALTY2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALTI2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALSV2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPK2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPB2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
back to top