CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALNS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella newport (strain SL254) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALHS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALG2 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALDC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALCH (D-erythrose-4-phosphate dehydrogenase OS=Salmonella choleraesuis GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALA4 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella agona (strain SL483) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ENTS8 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=epd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VSTDF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVQKPVKAYEVNLLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SALAR (D-erythrose-4-phosphate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPIKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = -2 
Query:  390 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 677
            ++ RVPT++V+ +DL+V ++ +   +++  A+   S   L+GI+ YTE  +VS DF  D  S++ D       +K  +KL+ W DNEWG++ R++D
Sbjct:  238 ISVRVPTINVTAMDLSVTVKTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNKHLIKLLVWCDNEWGFANRMLD 333
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_SALNS2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALHS2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALG22.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALEP2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALDC2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALCH2.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALA42.216e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_ENTS82.216e-1334.31D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_SALAR2.895e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_PHOPR2.895e-1335.42D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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