CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_KLEP7 (D-erythrose-4-phosphate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VSTDF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_KLEP3 (D-erythrose-4-phosphate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VSTDF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIAL---SKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVP +  S+V+L V LEKDA+ ++I  A+K  +    +    Y ED++VS+D VG    S+FD+K    +     K  K+ +WYDNE  Y  ++V ++ + AK
Sbjct:  235 MALRVPVLTGSIVELCVALEKDATVEQINQAMKKAASASFR----YCEDEIVSSDIVGSEHGSIFDSKLTNIIEVDGNKLYKVYAWYDNESSYVNQLVRVVNYCAK 336          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 33/104 (31.73%), Postives = 61/104 (58.65%), Query Frame = -2
Query:  366 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKT 677
            ++ RVPT++V+ +DL+V +       E+   ++  + G  +GI+ YTE  +VSTDF  D  S++ D        +  +K + W DNEWG++ R++D  + +A++
Sbjct:  233 ISVRVPTINVTAIDLSVSVTSPVDVAEVNQLLQKAARGSFRGIVDYTELPLVSTDFNHDPHSAIVDCTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMARS 336          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHISS (D-erythrose-4-phosphate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHIFL (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri GN=epd PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHIF8 (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHIDS (D-erythrose-4-phosphate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHIBS (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_SHIB3 (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_KLEP72.895e-1334.31D-erythrose-4-phosphate dehydrogenase OS=Klebsiell... [more]
E4PD_KLEP32.895e-1334.31D-erythrose-4-phosphate dehydrogenase OS=Klebsiell... [more]
G3P_MYCPN3.781e-1337.74Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
E4PD_YERE83.781e-1331.73D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_SHISS3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIFL3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIF83.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIDS3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIBS3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIB33.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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