CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ESCF3 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ENT38 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sp. (strain 638) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNLLLQKAAQGSFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSM (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSE (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SE11) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLU (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLI (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12) GN=epd PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLC (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL6 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6 GN=epd PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL5 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_ESCF33.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ENT383.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_ECOUT3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSM3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSE3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLU3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLI3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLC3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL63.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL53.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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