CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOHS (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECODH (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECOBW (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO8A (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO81 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO7I (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO5E (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO57 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O157:H7 GN=epd PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO55 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
[Close]
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ECO27 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2 
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ YTE  +VS DF  D  S++ D           +K + W DNEWG++ R++D  + +A
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_ECOHS3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECODH3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOBW3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO8A3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO813.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO7I3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO5E3.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO573.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO553.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO273.781e-1333.33D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
back to top