CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S   L  I+ YTE  +VS DF  D  S++ D       +   VK++ W DNEWG++ R++D  + ++K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAMSK 339          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S   L  I+ YTE  +VS DF  D  S++ D       +   VK++ W DNEWG++ R++D  + ++K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAMSK 339          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S+  L  I+ YTE  +VS DF  D  S++ D       +   VK++ W DNEWG++ R++D  + + K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASQCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALVMKK 339          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    SV +L   L+K+ + +EI AA+K  +        GYTED++VS D VG S  S+FDA   K       + VK VSWYDNE  Y++++V  + + AK
Sbjct:  231 AQRVPVPTGSVTELISVLKKNVTVEEINAAMKEAANESF----GYTEDEIVSADVVGISYGSLFDATLTKIVDVDGSQLVKTVSWYDNEMSYTSQLVRTLEYFAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  369 AFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALS---KKFVKLVSWYDNEWGYSTRVVDLIVHIAK 674
            A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+FDA     +S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  232 AQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_VIBFM9.312e-1233.98D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_VIBF19.312e-1233.98D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_ALISL1.216e-1133.98D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]
G3P_CLOPA2.075e-1140.95Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P1_STAAW2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM2.075e-1137.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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