CB304494

Overview
NameCB304494
Unique NameCB304494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:173..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_JANSC (Nucleoside diphosphate kinase OS=Jannaschia sp. (strain CCS1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  284 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 634
            R L G+I  +FE+ G  +   K + +    A+  Y   S +PFFG L E++ S P+V  + EGE  +   R ++GATNPA +APGTIR + A+  G N +HGSD+ E+A +EIA +F
Sbjct:   17 RNLTGQIAAKFEEAGLRIVASKRIQLTLAQAQAFYGVHSERPFFGELCEFMISEPIVVQVLEGEDAIVKNREVMGATNPADAAPGTIRKEFALSIGENSVHGSDAPETAAEEIAFFF 133          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  284 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 634
            +G++G+II RFE     +  +K + + R  AE  Y     +PFF  L++++ SGPVV M+ EG   V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:   15 KGVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = -2
Query:  281 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 634
            + ++G+I  RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   17 KNVIGQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_WOLWR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = -2
Query:  278 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 628
            + G+I    E  G  +   K+M + +  AE  YE    +PFFG L+E++TSG V+  +  GE  V   R I+GATNP Q+  GTIRGD A     N +HGSDS+E+A+KEIA +F +
Sbjct:   19 ITGKINSYIESSGLKIIAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  284 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 634
            R L G I  +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA +APGTIR + A   G N +HGSD+ E+A +EIA +F
Sbjct:   17 RNLTGAINAKFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_RHIEC (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  269 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 634
            R L G I    E  G  +   K + + R  AE  Y     +PFFG L+E +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A +EI  WF D  I
Sbjct:   17 RNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEI 138          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PARDP (Nucleoside diphosphate kinase OS=Paracoccus denitrificans (strain Pd 1222) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  284 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 634
            R L G+I  +FE+ G  +   K + +    A + Y +   +PF+G L E++TS PVV  + EGEG +   R ++GATNPA +  GTIR + A+  G N +HGSDS E+A +EIA +F
Sbjct:   17 RNLTGKINAKFEEAGLRIVAQKRIQLTLAQAGQFYAEHKERPFYGELTEFMTSEPVVVQVLEGEGAILKNREVMGATNPANADEGTIRKEFALSVGENSVHGSDSPEAAAREIAFFF 133          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_VARPS (Nucleoside diphosphate kinase OS=Variovorax paradoxus (strain S110) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  284 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 634
            + ++G+I+ RFE  G  +   KL+ + R  AE+ Y     +PFF  L++++ SGPV   + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +F
Sbjct:   17 KNVIGKIVSRFEAAGLKIVAAKLVHLSRNEAEQFYSVHKERPFFKDLVDFMISGPVFVQVLEGENAIAKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAANEVAFFF 133          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_CHLCV (Nucleoside diphosphate kinase OS=Chlamydophila caviae GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  284 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 625
            +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI  +F
Sbjct:   18 IGEIVAIFEKSGFRIAAMKMVHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_WOLPM (Nucleoside diphosphate kinase OS=Wolbachia pipientis wMel GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = -2
Query:  278 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 628
            + G I    E+ G  +   K+M + +  AE  YE    +PFFG L+E++TSG VV  +  GE  V   R I+GAT+P Q+  GTIRGD A     N +HGSDS+E+A+KEIA +F +
Sbjct:   19 ITGNINSYIEQSGLKITAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVVVQVLVGENAVSKYRQIMGATDPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
The following BLAST results are available for this feature:
BLAST of CB304494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_JANSC5.711e-2141.88Nucleoside diphosphate kinase OS=Jannaschia sp. (s... [more]
NDK_HELHP5.711e-2141.88Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_ACIAC5.711e-2138.14Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_WOLWR7.459e-2143.59Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_SILST7.459e-2142.74Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_RHIEC7.459e-2144.26Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_PARDP7.459e-2141.88Nucleoside diphosphate kinase OS=Paracoccus denitr... [more]
NDK_VARPS9.742e-2139.32Nucleoside diphosphate kinase OS=Variovorax parado... [more]
NDK_CHLCV9.742e-2143.86Nucleoside diphosphate kinase OS=Chlamydophila cav... [more]
NDK_WOLPM1.272e-2043.59Nucleoside diphosphate kinase OS=Wolbachia pipient... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304494 ID=CB304494; Name=CB304494; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTCAACAAAAAAGCTTAA
ATATTGAATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTT
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