CB304494

Overview
NameCB304494
Unique NameCB304494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:173..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 634
            RGL+G+II RFE+KGF L  +K +   +    +HY DL  +PF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:   19 RGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 80/135 (59.26%), Postives = 100/135 (74.07%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 634
            R +VGE+I RFE+KGF L  +K +   +   EKHY +LS KPF+  LI+Y++SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF  +  + +Q+    WIYE
Sbjct:   17 RCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 634
            R LVGEII RFE KGF+L GLK+M V    AEKHY     +PFF SL+++ITS PVVAM+W+GEGV+ + R IIGATNP  + PGTIRGD  I  GRN+IHGSD  ++A+ E++LWF D  + NW  ++ PW+ E
Sbjct:   15 RNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNPLNAEPGTIRGDFGISVGRNLIHGSDGPDTAKDEVSLWFSDAELANWTPAITPWVVE 149          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 80/135 (59.26%), Postives = 100/135 (74.07%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 634
            RGLVGEI+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:   15 RGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 80/135 (59.26%), Postives = 97/135 (71.85%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 634
            RGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI LWF P+  I ++     WIYE
Sbjct:   18 RGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 77/135 (57.04%), Postives = 100/135 (74.07%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 634
            RGLVG+I+ RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:   18 RGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 634
            RGLVG++I RFE KGF L GLKL++V R  AE+HY     +PFFGSL+E+I S PVVAM+WEG+G +   R IIGATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:   15 RGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 634
            RGL+G+II RFE+KGF L  +K     +    +HY DL  +PF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:   19 RGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 634
            RGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:   15 RGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 634
            RGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:   15 RGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
The following BLAST results are available for this feature:
BLAST of CB304494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA2_XENLA8.475e-4157.78Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_GINCI1.446e-4059.26Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_MICAN1.888e-4057.04Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_GLOVI1.888e-4059.26Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDKB_BOVIN3.220e-4059.26Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDKB_CANFA5.493e-4057.04Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDK_SYNP27.174e-4056.30Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKA1_XENLA7.174e-4057.78Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_SYNP61.598e-3957.04Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE71.598e-3957.04Nucleoside diphosphate kinase OS=Synechococcus elo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304494 ID=CB304494; Name=CB304494; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTCAACAAAAAAGCTTAA
ATATTGAATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTT
back to top