CB304494

Overview
NameCB304494
Unique NameCB304494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:173..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 72/135 (53.33%), Postives = 102/135 (75.56%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 634
            RGL+G+II +FE+KG+ + GLK+M + R  AE+HY + + KPFF  L+++ITSGPVVAM+ EG+ VV T R ++GATNP ++APGTIR    +  GRNIIHGSDS+ESAQ+EI ++F  +  I++  ++  WIYE
Sbjct:   15 RGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = -2
Query:  239 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 634
            R L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:   15 RNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 634
            RGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:   17 RGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = -2
Query:  236 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 634
            R L+GEI+ RFE KG+ L G KLM V    AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++G TNP ++ P TIRGD  I  G+NIIHGSDS ESA++EI L+F +  I +++   + WIY
Sbjct:   15 RELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWIY 148          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 634
            R LVGEI+ RFE+KGF L  LKL+        +HY +L  KPF+  L++Y++SGPVVAM+W+G  VV   R +IGAT+P  + PGTIRGD  +  G+N+IHGSDSVESA +EIALWF +   + W+ S   W+YE
Sbjct:   35 RRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.266e-36
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 634
            RGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:   17 RGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 74/135 (54.81%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 634
            RGLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+++ITSGPV+AM+WEG+GV+ + R +IGAT P  + PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   17 RGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 74/135 (54.81%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 634
            RGLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:   17 RGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 75/135 (55.56%), Postives = 92/135 (68.15%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 634
            RGLVGEI+ RFE+KGF L GLK +   +  AEKHY     +PFF  L+ +ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDL I  GRN+IHGSD  E+A  EI LWF    + NW  S   W  E
Sbjct:   17 RGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CB304494 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 74/135 (54.81%), Postives = 96/135 (71.11%), Query Frame = -2
Query:  233 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 634
            R LVGEII R EKKG  L G K MTV +  AE HY + + KPF+  L+ +ITS PV AM+ EGE VV+  R +IG TNP ++APGTIRGDL +  GRN+IHGSDSVESA++EI+LWF    ++ + ++   W+YE
Sbjct:   15 RKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYE 149          
The following BLAST results are available for this feature:
BLAST of CB304494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DESRM5.685e-3753.33Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BACHD5.685e-3753.38Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_PROM19.696e-3754.07Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_OCEIH9.696e-3752.99Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK3_MOUSE9.696e-3752.59Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_PROMT1.266e-3653.33Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM1.654e-3654.81Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM31.654e-3654.81Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA2.160e-3655.56Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_STACT4.812e-3654.81Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304494 ID=CB304494; Name=CB304494; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTCAACAAAAAAGCTTAA
ATATTGAATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGTCCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTT
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