CB304513

Overview
NameCB304513
Unique NameCB304513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:8..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_METI4 (Chaperone protein dnaK OS=Methylacidiphilum infernorum (isolate V4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  226 KNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGAS 597
            + KITIT   G LSKEEIE+M +EAE Y+ +D ++K++ EAKN  +N AY     +++     K+ +A K ++E  IE+  + + G+   + +  +  M EL      I  +MY+   + A A+
Sbjct:  493 EQKITITGSSG-LSKEEIERMTKEAEAYREQDLKNKERAEAKNNADNAAYQAEKLLRE--YGDKVDSAKKMEVEKCIEKVREVIKGD---DTEAIKRAMDELNEKVQAISVEMYRAASSKASAA 610          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_CLONN (Chaperone protein dnaK OS=Clostridium novyi (strain NT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = -2
Query:  235 ITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADA 588
            ITIT     LS +EI+K V+EAEK+ AED++ K+ VE KN  ++  Y     +KD  +  K+  ADKK +E+ +E   Q  DG  L   +  +    EL      + +K+YQ  GA+A
Sbjct:  471 ITITASTN-LSDDEIDKAVKEAEKFAAEDEKRKESVEVKNNADSALYQTEKALKD--LGDKVEEADKKNVEEKLEALRQVKDGEDL---EAIKKATTELTEEFYKVSSKLYQQAGAEA 582          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_CAMFF (Chaperone protein dnaK OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dnaK PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  229 ITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ---GGGADAGA 588
            ITI+   G LS+EEI KMV +AE +K +D + K+ VEA+NA ++ A+    ++ +  +  K+P  D+ KIE A+ +  + L  ++ A  ++ + K+K L  + + +   MY+    G AD GA
Sbjct:  493 ITISGSSG-LSEEEINKMVNDAEAHKEDDKKRKEAVEARNAADSLAHQTEKSLSE--MGEKIPAEDRAKIEAALNDLKEVLK-DESASKEQIDVKVKALSEVSHKLAEAMYKDQNAGAADGGA 611          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_LACGA (Chaperone protein dnaK OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -2
Query:  226 KNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGAS 597
            + KITI +  G LS EEI+KM ++AE++  ED + K++V+ +N ++   +    T+K+ K   K+P  + K ++DA++   +    N L   DE ++K + L      +  K+YQ  G   GA+
Sbjct:  467 EQKITIKSSSG-LSDEEIKKMQKDAEEHAEEDKKRKEEVDLRNEVDQLIFTTEKTLKETK--GKVPETETKNVQDALDALKKAQKDNNL---DEMKEKKEALSKAAQDLAVKLYQQNGGAQGAA 584          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_CENSY (Chaperone protein dnaK OS=Cenarchaeum symbiosum GN=dnaK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = -2
Query:  226 KITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ-------GGGADAGAS 591
            KITI +   +LSK+EIEK+ ++AEK+  ED++ K KVE KN  E++ Y     I  + +  K+      KI D I E  + LD     + D    K+  L+ + N I  +MYQ        GGA  GA+
Sbjct:  475 KITIESSS-KLSKDEIEKLREDAEKFSDEDEKKKGKVELKNEAESFVYTAEKLINHD-LKDKITQEQGIKISDGIREVKEALD----QDPDILRPKLDSLKAMVNEITTEMYQQAAAQGAAGGAAGGAA 597          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_HALHL (Chaperone protein dnaK OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = -2
Query:  229 LSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ--GGG----ADAGA 561
            L+++EIE+MV+EAE+   ED   ++ VEA+N  EN  ++ R ++ D  +  ++  A+K++IE AI E  Q  DG    + D  E K +EL      +  K YQ  GGG    ADAGA
Sbjct:  507 LTEDEIERMVKEAEENAEEDRRQRELVEARNQAENMIHSTRKSLSD--LGEQVGDAEKQEIESAISELEQVKDGE---DKDAIEQKTQELATKAGELAQKAYQQAGGGDEASADAGA 618          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_DESRM (Chaperone protein dnaK OS=Desulfotomaculum reducens (strain MI-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = -2
Query:  226 ITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGAS 588
            I+IT   G LS +EI +MV EAEK+  ED + K+ VE KN  ++  Y    TIKD  +      A  + ++ A+EE    ++GN   + D  ++K++EL    + + A +YQ   A   A+
Sbjct:  470 ISITGGTGGLSDDEINRMVNEAEKFAEEDKKRKEAVEVKNQADSLIYQAEKTIKD--LGENADKAKVEAVQKAVEELRTAMNGN---DTDLIKNKLEELTKPLHELTADLYQQQQAQQAAA 585          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_BACSH (Chaperone protein dnaK OS=Bacillus sphaericus GN=dnaK PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  214 ITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMY----------QGGGADAGASMDED 588
            I I +D G LS+ EIE+MV++AE  +  D + K++ + +N  +   + +  TI D  +  ++   +KK +EDA +E  + L+  +L      ++K   LEG+  P++ K+Y          QGG ADAGA   +D
Sbjct:  469 IVIQSDSG-LSEAEIERMVKDAEANRDADAKRKEEADLRNEADQLVFQVDKTITD--LGEQITEDEKKSVEDARDELKKALEAGELEGIKAAKEK---LEGVLQPLVMKVYEQAAAAAQARQGGEADAGAGKKDD 597          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_WOLSU (Chaperone protein dnaK OS=Wolinella succinogenes GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  214 KITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMY-----------QGGGADAGASMDED 591
            +I IT   G LS  EIEKMV++AE +K ED + K  +EAKN  ++  Y    ++ + K   +L  +++ KIE AI +  + L    L + +E ++K+K L  + + +   MY           QG  A+AG   D+D
Sbjct:  492 EIKITGSSG-LSDSEIEKMVKDAELHKEEDSKRKSMIEAKNQADSLLYQTEKSLGEFK--DQLEESERTKIESAINDLKETLKKENLTK-EEIDEKVKALTEVSHKLAEAMYKKENPQAADAQQGNTANAGKKKDDD 624          
BLAST of CB304513 vs. ExPASy Swiss-Prot
Match: DNAK_LACJO (Chaperone protein dnaK OS=Lactobacillus johnsonii GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 38/124 (30.65%), Postives = 69/124 (55.65%), Query Frame = -2
Query:  226 KNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGAS 597
            + KITI +  G LS EEI+KM ++AE++  ED + K++V+ +N ++   +    T+K+ +   K+P  + K ++DA++   +    N L   DE ++K + L      +  K+YQ  G   GA+
Sbjct:  467 EQKITIKSSSG-LSDEEIKKMQKDAEEHAEEDKKRKEEVDLRNEVDQLIFTTEKTLKETE--GKVPETETKNVQDALDALKKAQKDNNL---DEMKEKKEALSKAAQDLAVKLYQQNGGAQGAA 584          
The following BLAST results are available for this feature:
BLAST of CB304513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
DNAK_METI41.644e-1133.87Chaperone protein dnaK OS=Methylacidiphilum infern... [more]
DNAK_CLONN1.644e-1137.29Chaperone protein dnaK OS=Clostridium novyi (strai... [more]
DNAK_CAMFF1.644e-1134.15Chaperone protein dnaK OS=Campylobacter fetus subs... [more]
DNAK_LACGA2.804e-1131.45Chaperone protein dnaK OS=Lactobacillus gasseri (s... [more]
DNAK_CENSY3.662e-1135.66Chaperone protein dnaK OS=Cenarchaeum symbiosum GN... [more]
DNAK_HALHL6.246e-1138.46Chaperone protein dnaK OS=Halorhodospira halophila... [more]
DNAK_DESRM6.246e-1133.88Chaperone protein dnaK OS=Desulfotomaculum reducen... [more]
DNAK_BACSH6.246e-1131.85Chaperone protein dnaK OS=Bacillus sphaericus GN=d... [more]
DNAK_WOLSU8.157e-1132.85Chaperone protein dnaK OS=Wolinella succinogenes G... [more]
DNAK_LACJO8.157e-1130.65Chaperone protein dnaK OS=Lactobacillus johnsonii ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_H09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_H09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304513 ID=CB304513; Name=CB304513; organism=Citrus sinensis; type=EST; length=598bp
TTTTTTTTTTTTTTTTTTTTTTTTTGAAACATAATATCTTTATGCATACA
CCAGGAAACAGTATTTACATGTAACAGAAGCAGGAAAAGGAAGAAAAGAT
CACACTCCCAACTCAACCCCTAATCATTAAACAACATTAAGCATAAATCC
TCAAATTTAATCCACCTCCTCAATCTTGGGGCCAGCACCGCTACCAGCAC
CAGCAGAAGGACCATCCTCATCCATACTTGCACCAGCATCAGCTCCACCT
CCTTGGTACATCTTGGCAATAATTGGGTTGCAGATGCCCTCCAGCTCTTT
CATCTTATCTTCAAACTCATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCC
ATTGGATGGCCTCCTCAATGGCATCTTCAATTTTCTTCTTGTCAGCAGTG
GGAAGCTTTGCGCTGATCTTTTCATCCTTGATTGTGTTTCTCATGTTGTA
AGCATAATTCTCGAGAGCATTCTTGGCCTCCACCTTTTTCTTGTGCTCGT
CATCCTCGGCCTTGTATTTTTCTGCCTCTTGTACCATCTTCTCTATCTCC
TCCTTAGAGAGTCTGCCCTTGTCATTTGTGATGGTAATCTTATTCTTC
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