CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE++EAFRVFDKD +GFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   78 KDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          

HSP 2 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  392 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 586
            E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 62/72 (86.11%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE+ EAF+ FDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   78 KDTDSEEEILEAFQGFDKDGNGFISAAELRHMMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   78 KETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTCK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML1_ORYSJ (Calmodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=CML1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.377e-29
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            D DSEEELKEAFRVFDKDQNGFISA ELRHVM N+GE+LTDEEV EMI EADVDGDGQINYEEFVK MMAK
Sbjct:   79 DKDSEEELKEAFRVFDKDQNGFISATELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCMMAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD DGDGQ+NYEEFV +M +K
Sbjct:   78 KETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMMTSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG INYEEFV++MMAK
Sbjct:   78 KDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMMMAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 60/72 (83.33%), Postives = 71/72 (98.61%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +D+DSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKL+++EV+EMIREADVDGDGQINYEEFVK+MM+K
Sbjct:   78 KDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEEFVKMMMSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 127.487 bits (319), Expect = 5.295e-29
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDG INYEEFV++MMAK
Sbjct:   78 KDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 5.295e-29
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE++EAFRVFDKD NG+ISAAELR+VMTNLGEKLTDE VDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   78 KDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = -1
Query:  410 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 607
            +DTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV
Sbjct:   71 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 136          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CALM_PATSP1.393e-2984.72Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_ACHKL1.393e-2986.11Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CALMB_HALRO1.393e-2984.72Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CML1_ORYSJ2.377e-2988.73Calmodulin-like protein 1 OS=Oryza sativa subsp. j... [more]
CALM_SUBDO3.104e-2984.72Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_STYLE3.104e-2986.11Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_BLAEM3.104e-2983.33Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CALM_TETPY5.295e-2984.72Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_OREMO5.295e-2983.33Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_ORYLA1.180e-2889.39Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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