CB304548

Overview
NameCB304548
Unique NameCB304548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:360..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 40/53 (75.47%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  222 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 380
            ANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:  103 ANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 40/53 (75.47%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  222 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 380
            ANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:  103 ANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:   94 ANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:   99 ANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:  108 ANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.872e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:  108 ANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.398e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = -1
Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   98 ANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
The following BLAST results are available for this feature:
BLAST of CB304548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1_CHICK4.007e-2078.57S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO4.007e-2078.57S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN4.007e-2078.57S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
SKP1B_DICDI4.431e-1975.47SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI4.431e-1975.47SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK14_ARATH7.557e-1976.79SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH7.557e-1975.00SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK4_ARATH1.684e-1871.43SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH2.872e-1869.64SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK9_ARATH6.398e-1869.64SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304548 ID=CB304548; Name=CB304548; organism=Citrus sinensis; type=EST; length=380bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGCAATAGACAAGGGTTC
AATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAGGAAATG
TTGATGTTCAATACTAAACACCTACTGGCAACATACTAAAAGACCACTAT
CATTATAACGACATTCCTATCACAAATATTAATGACCGAGCCTTCATCAC
TTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCTCCTCTT
CTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGGATCTCC
TCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGTCAAGTC
CAGCAAACCCTTAATGTTCAGGTAATTGGC
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