CB304552

Overview
NameCB304552
Unique NameCB304552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.772e-41
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G + S+ I GS  T W  M RNWG NW S  Y  GQ+L F+VT  DG+T+   N+VP+ W
Sbjct:  124 NGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 3.023e-41
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G + S+ + GS  T W  M RNWG NW S  Y  GQ L F+VT  DG+T+   N+VP+ W
Sbjct:  142 NGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 5.157e-41
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+ LVLVTNV G+G V +  +KGS T W +MSRNWG+NWQSN Y  GQ+L F+V A DG  VT+ +V PANW
Sbjct:  117 GGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.960e-40
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVLVTNV  AG + S+ + GS T  W  M+RNWG  W S  Y  GQ L F+VT +D +T+   NVVP  W
Sbjct:  129 NGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.559e-40
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S  Y  GQ L F+VT +DG+T+   NVV   W
Sbjct:  124 SGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 9.726e-40
Identity = 69/125 (55.20%), Postives = 97/125 (77.60%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF LVL+TNV G+G V ++S+KGSKTGW  ++RNWG NWQ N    GQ+L F+VT++ G+T+  N+VVP  W
Sbjct:  117 DGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.270e-39
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF LVL++NV G+G + SV +KG  T    +SRNWG NWQS+    GQ+L F VT++ G+T+   N+VPA W
Sbjct:  122 DGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.659e-39
Identity = 70/125 (56.00%), Postives = 95/125 (76.00%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F LVLV+NV G+G V SVS+KG  TGW  ++RNWG NWQ N    GQ+L F VT++ G+T+   NVVP+ W
Sbjct:  117 SGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.167e-39
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +     GQ + F+VT SDG T   NNV+P NW
Sbjct:  141 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.167e-39
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +     GQ + F+VT SDG T   NNV+P NW
Sbjct:  134 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
The following BLAST results are available for this feature:
BLAST of CB304552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP14_ORYSJ1.772e-4157.94Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ3.023e-4157.94Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ5.157e-4158.87Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ1.960e-4056.35Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ2.559e-4055.56Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ9.726e-4055.20Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.270e-3956.00Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.659e-3956.00Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH2.167e-3954.03Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH2.167e-3954.03Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304552 ID=CB304552; Name=CB304552; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCTTAAAATCTAAAAC
TGACCACCCTCAAAGGGTTGCCCAAATTGCCAATTTGCAGGCACAACATT
GTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTCACTTGGAAAAAAAGAC
TTTGGCCGTTAAAATAAAAATTGCTCTGCCAATTTTGGCCCCAGTTCCTT
GACATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTAC
ATCTCCTGCTCCTCCGACATTTGTGACCAAAACCAGGTTGAAGTATGAGT
GTCCATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTT
CTGAAGGAAATTGGGACGATGCCGGCGCGGTATTGGGCAATTTGCAAAAA
AGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGC
CGTTG
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