CB304567

Overview
NameCB304567
Unique NameCB304567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2483 contig Csv1_Contig2483:158..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRDX5_RAT (Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  210 QQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGL--GTRSRRFALMVDALKVKAANVE-SGGDFPVSSADDILKAL 623
            ++V++  L   KK +LFGVPGAFTP CS  H+PGF+E+A  LK+K    + C+SVND FV   W +       V+ LAD +  +     L LD S   L    R +RF++++D   VKA NVE  G     S A +IL  L
Sbjct:   73 KKVNLAELFKDKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDAFVTAEWGRAHQAEGKVQLLADPTGAFGKETDLLLDDSLVSLFGNRRLKRFSMVIDKGVVKALNVEPDGTGLTCSLAPNILSQL 213          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  252 QVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGL--GTRSRRFALMVDALKVKAANVESGG 620
            +V++  L  GKK +LFGVPGAFTP CS  H+PGF+E+A+ LK+K V  + C+SVND FV   W +       V+ LAD +  +     L LD S   +    R +RF+++V    VKA NVE  G
Sbjct:   76 KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKVEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDG 200          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: YRP2_RHIET (Putative peroxiredoxin in rpoN2 3'region OS=Rhizobium etli PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.506e-19
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = -2
Query:  210 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESG-GD------FPVSSADDILKAL 596
            +GK+VILF +PGAFTP CS   +P F     E K   +D+I C+SVND FVM AW K+    K+VK + DGS ++T  +G+ +     G G RS R+A +++   V+    E G GD      + VSS  +ILK L
Sbjct:   39 SGKRVILFSLPGAFTPICSTFQLPDFESLYVEFKKNGIDDIYCLSVNDAFVMNAWGKS-QGLKNVKLIPDGSGEFTRKMGMLVAKDNLGFGLRSWRYAAVINNGVVEGWFEEEGFGDNCATDPYGVSSPQNILKCL 173          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PMP20_EMENI (Putative peroxiredoxin pmp20 OS=Emericella nidulans GN=AN8692 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = -2
Query:  210 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAK-TFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVE-SGGDFPVSSADDILKAL 596
            A KKVILF +PGAFTP CS +HVP +IE+  E+++K VD +  ++ ND FVM AW K    +N  + FL+D  AK++ ++G      E+G   R++R+A+++D  KV  A +E +      SSA+ ++K L
Sbjct:   44 ADKKVILFALPGAFTPVCSARHVPEYIERLPEIRAKGVDVVAVLAYNDAFVMSAWGKANGVKNDDILFLSDPEAKFSKSIGW---ADEEG---RTKRYAIVLDHGKVTYAALEPAKNHLEFSSAETVIKHL 168          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = -2
Query:  210 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFP-ENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVE-SGGDFPVSSADDILKAL 596
            A KKVILF +PGAFTP CS +HVP +IEK  E+++K VD +  ++ ND +VM AW K        + FL+D  A+++ ++G      E+G   R++R+AL++D  K+  A +E +      SSA+ +LK L
Sbjct:   44 ADKKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVMSAWGKANQVTGDDILFLSDPDARFSKSIGW---ADEEG---RTKRYALVIDHGKITYAALEPAKNHLEFSSAETVLKHL 168          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: Y4VD_RHISN (Putative peroxiredoxin y4vD OS=Rhizobium sp. (strain NGR234) GN=NGR_a01200 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = -2
Query:  255 AGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESG 596
            +GK+V+LF +PGAFTPTCS + +P F    DE     ++ + C+SVND FVM AW K     K V+ + DGS ++T  +G+ +     G G RS R+A +V+   V+    E G
Sbjct:   39 SGKRVVLFSLPGAFTPTCSTQQLPDFERLYDEFGKVGIEAVYCLSVNDAFVMNAWGKALGLEK-VRLIPDGSGEFTRKMGMLVAKDNLGFGMRSWRYAAVVNDSVVEQWFEEEG 151          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = -2
Query:  210 KKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTF-PENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 590
            K V++  +PGAFTPTC+  H+P F+EK   LKS  VD ++ +S NDPFV  A+ K     +++  F +D  A+++ + GL LDL     GTR+ R+A++V    VK    +S G    S  D +L AL
Sbjct:   41 KTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDL-PPAFGTRTARYAIIVSNGVVKYVEKDSEG-VAGSGVDAVLAAL 166          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: AHP1_YEAST (Peroxiredoxin type-2 OS=Saccharomyces cerevisiae GN=AHP1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 48/136 (35.29%), Postives = 81/136 (59.56%), Query Frame = -2
Query:  210 LAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADEL-KSKDVDEILCISVNDPFVMKAWAKTF--PENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVD--ALKVKAANVESGGDFPVSSADDILKAL 602
            ++  KKVI+ G P AF+PTC++ H+PG+I   DEL K K+VD+++ ++V++PF  +AWAK+    +   +KF +D    +T ++G EL + +      S R+A++V+   +   A     G D  VSS + +L  L
Sbjct:   43 ISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGDGVYW--SGRWAMVVENGIVTYAAKETNPGTDVTVSSVESVLAHL 176          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PMP20_SCHPO (Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe GN=pmp20 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = -2
Query:  210 KVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFP--ENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESG-GDFPVSSADDILKAL 587
            K I+ GVPGAFTP CS   VPG+I    +  +K +  I  ++VND FV KAW K+F   E   V F+AD + ++T A     D S      RS+R+A +V+  KV    +E+   D  +SSAD +L +L
Sbjct:   29 KFIIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKVLSSL 156          
The following BLAST results are available for this feature:
BLAST of CB304567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRDX5_RAT5.176e-2041.13Peroxiredoxin-5, mitochondrial OS=Rattus norvegicu... [more]
PRDX5_PAPHA5.176e-2043.20Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]
YRP2_RHIET1.506e-1941.91Putative peroxiredoxin in rpoN2 3'region OS=Rhizob... [more]
PMP20_EMENI3.355e-1941.22Putative peroxiredoxin pmp20 OS=Emericella nidulan... [more]
PMP20_ASPFU1.275e-1840.46Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
Y4VD_RHISN6.328e-1840.35Putative peroxiredoxin y4vD OS=Rhizobium sp. (stra... [more]
PMP20_LIPKO8.264e-1839.84Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]
AHP1_YEAST3.140e-1735.29Peroxiredoxin type-2 OS=Saccharomyces cerevisiae G... [more]
PMP20_SCHPO3.472e-1640.31Putative peroxiredoxin pmp20 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304567 ID=CB304567; Name=CB304567; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAAAAACACACCCTTT
ATTCCGATAAAGATGAACAACAGTTTAAACAAAAGACTTCTCGCGTCATA
CATAACAATATTCGAGATCCACTGGTTTATATTCATCCTAAGCATAGCAC
AGCATAAGGAAGTAATAACTCAACCAACACTAAGCAGCTGGGATGGAACT
GCAAATTTAAAGAGCCTTGAGGATGTCATCAGCACTGGAGACTGGGAAAT
CTCCACCAGATTCAACATTTGCGGCCTTCACCTTGAGGGCATCAACCATG
AGAGCAAACCTCCTTGACCGGGTGCCAAGTCCTTTCTCACTGAGGTCAAG
CTCAAGCCCCAAAGCATGGGTGTATTTTGCTGAGCCATCAGCCAGGAACT
TCACGCTCTTGTTCTCAGGAAATGTTTTGGCCCATGCCTTCATCACAAAT
GGGTCATTAACGCTTATGCAGAGAATTTCATCGACGTCTTTTGACTTCAA
CTCATCAGCCTTCTCGATGAATCCAGGCACATGCTTCAAGCTGCAAGTAG
GAGTGAAAGCACCGGGGACGCCAAAGAGGATGACCTTTTTACCGGCAGCG
AGCGAGTGTACGGACACTTGCTGCAACTGATCTTGTTCGTCGAAGTAAGC
GAGAATA
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