CB304568

Overview
NameCB304568
Unique NameCB304568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:578..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  180 VLCEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 617
            VL E LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  181 VLGESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSR-VPRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFT 324          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRL----KEKTFLEGRMMVGH--YYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E++  ++ L + L  +    LGL  +++     E+   E      H  +YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  165 EFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRL----KEKTFLEGRMMVGH--YYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E++  ++ L + L  +    LGL  +++     E+   E      H  +YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  165 EFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 58/174 (33.33%), Postives = 91/174 (52.30%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRL----KEKTFLEGRMMVGH--YYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E++  ++ L + L  +    LGL  +++     E    E      H  +YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  165 EFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = -2
Query:  165 GLGLKTDRLKEKTFLEGRMMVG--HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPA--RFRQFTHTDYI 605
            G+ L  +R   K F E    +   +YYP C QP+L +G   H DP  LTIL QD  GGLQ+    +W  + P P A V+NIGD    ++N  Y S  HR + NS  E R + A F  P + + +  P  EL++  K    ++  FT + ++
Sbjct:  205 GMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERE-RKTFAFFLCP-KGEKVVKPPEELVNGVKSGERKYPDFTWSMFL 353          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = -2
Query:  165 GLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 605
            GL L  +R   + F E    +M  ++YP C  PDLT+G   H DP  LTIL QD   GLQ+    +W  ++P P A V+NIGD    +SN  + S  HR + N     R S+A F  P ++D +  P  +++   K  ++  FT + ++
Sbjct:  204 GLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRE-SARKSMAFFLCP-KKDKVVKPPSDILEKMKTRKYPDFTWSMFL 350          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.457e-16
Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  108 LFGVLCEGLGLKTDRLKEKTFLEGR---MMVGHYYPYCPQPDLT----VGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 626
            +  ++ EGL ++   +  K  ++ +   +   ++YP CP+  +     +G   HTDP  ++IL  ++  G QI   +  W+ V P   +  IN+GD LQ+M+N  + SV HRVLAN   +PR+S+  F  P   + +  P P L+   K + +++FT  +Y +  +  +L    L NY R+
Sbjct:  147 ILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGI-DPRLSMIYFCGPPLSEKI-APLPSLMK-GKESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 58/205 (28.29%), Postives = 102/205 (49.76%), Query Frame = -2
Query:  111 KEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKT----DRLKEKTFLEGRMMVGHYYPYCPQPDLT----VGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYR 698
            +E P   R     +   VK +   +  ++ EGLG++      RL +    +    + HY P CP+        VG   HTDP  +++L  +   GLQI   +  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA+++ + R+S+  F  P+  +++  P P ++   +   +++FT  +Y    +T +L    L  + +
Sbjct:  127 RENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPP-CPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTT-KSRLSMIYFGGPALSENI-APLPSVMLKGEECLYKEFTWCEYKKAAYTSRLADNRLAPFQK 328          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 58/210 (27.62%), Postives = 97/210 (46.19%), Query Frame = -2
Query:  111 PELKEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGR---MMVGHYYPYCPQPDL-------TVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYR 707
            P L + P   R    E+   V+++   +   + +GLG+K      K   +     ++  ++YP CP  +         +G   HTDP  +++L  ++  GLQI   +  W+ V P   +   N+GD LQ+M+N  + SV HRVLAN   + R+S+  F  PS    +  P   LI  E    + +FT ++Y    +  +L    L  + R
Sbjct:  114 PSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRI-APLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSDNRLQQFER 321          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 45/133 (33.83%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  108 VGITSHTDPGPLTILLQDDKGGLQIK-HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 503
            +G   H+DP  LTIL  ++ GGLQI  H   W+ V P P    + +GD LQ+++N  ++SV HRVL N++ +PR+S+  F +P   + L  P  ++++   P  +R FT   Y    +  +L G T ++ +++
Sbjct:  204 IGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTT-KPRMSMMYFAAP-PLNWLISPLSKMVTAHSPCLYRPFTWAQYKQAAYALRL-GDTRLDQFKV 333          
The following BLAST results are available for this feature:
BLAST of CB304568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAO1D_WHEAT4.477e-1839.86Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G3O23_WHEAT4.477e-1833.33Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT4.477e-1833.33Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT7.637e-1833.33Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
GAOX3_ARATH1.103e-1635.76Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX2_ARATH1.881e-1634.90Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
G2OX1_PEA2.457e-1629.83Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX_PHACN2.716e-1528.29Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX1_ARATH2.716e-1527.62Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX2_PEA3.547e-1533.83Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304568 ID=CB304568; Name=CB304568; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACACTTGAATTGTTATTCTT
ACGTAAGAATAGTTTATACAGGCACAAACAACCAGATTTACCAAGTTTTG
TTTCTTACAGCCTATAGTAATTCACCAATGTTTTTCCATCTAACTGCTTT
GTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAACTGCCGAAAACGAGC
TGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCCATAAAGGCTGTCCC
TCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTCGTGGTTCCGGGGAC
GAATTAGCCAATACTCTATGCTCTACACTTATGTATTCATCATTGGACAT
AATCTGAAGTATATCCCCAATGTTAATAACCAGAGCTCCTGGAACTGGTT
TAACATCCACCCATTCCTCACCATGCTTAATTTGCAGCCCACCTTTATCA
TCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTATGAGATGTGATCCC
CACTGTCAGATCAGGCTGCGGACAGTAGGGATAATAATGGCCCACCATCA
TCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTATCGGTTTTCAACCCC
AAACCTTCACACAGCACCCCAAACAAAAGCTCTCCGAGCTGTTTTACATG
GTGGTTCCACTCGACTGCCTCTTTCCTACATATTTCAGGAACTTCTTTCA
GCTCTGGCTCCGTCAGACCTAGCCTTATCTGC
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