CB304568

Overview
NameCB304568
Unique NameCB304568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:578..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 56/199 (28.14%), Postives = 100/199 (50.25%), Query Frame = -2
Query:  141 TEPELKEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGR----MMVGHYYPYCPQPD--LTVGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQL 713
            T    ++ P+I R+   E+   +K++   +  ++ E LG++      K   + +    + + HY     + +  + VG   HTDP  +++L  ++  GLQI  K G  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA++    RIS+  F  P     +  P P L+  +    +++FT + Y +  +  +L
Sbjct:  126 TSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGS-WVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTR-RSRISMIYFGGPPLSQKI-APLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  165 YPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIK----HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 533
            YP CP P L +G+  HTD   LTIL Q +  GL+I+     G  W+ V+P+ G+LV+ +GD+  I+SN ++ S  HR + N +   R+S A F  P +   + GP         P  +R+    +Y+
Sbjct:  211 YPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKT-HHRVSAAYFAGPPKNLQI-GPLTS--DKNHPPIYRRLIWEEYL 333          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  168 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDY 500
            G+  HTD   LTIL QD  GGL++++  +W+ VKP   AL +NIGD+ Q +SN  Y SV HRV++ ++ E R+SIA F  P           E+     P ++R+F+  +Y
Sbjct:  212 GLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCPYLE-------TEIDCFGYPKKYRRFSFREY 314          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 60/208 (28.85%), Postives = 98/208 (47.12%), Query Frame = -2
Query:  108 KEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGL----KTDRLKEKTFLEGRMMVGHYYPYCPQPDLT-----VGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 698
            +  P I R+   E+   +K++      ++ E L +    K  RL +    +  + + HY    P+ + T     +G   HTDP  +++L  +D  GLQI  K G  WVDV P   +  + +GD LQ+M+N  + SV+HRV+ N+    RIS+  F  P   + +  P   L+  +    + +FT + Y      K    KT +  YRL
Sbjct:  127 RHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHY----PEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGT-WVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTK-RSRISMIYFAGPPLSEKI-APLSCLVPKQDDCLYNEFTWSQY------KLSAYKTKLGDYRL 321          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = -2
Query:  219 RKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEE--WVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPEL 677
            RK  V+++  +      +  +L E L L  D   E        +    YP  P     +G+  HTD   LT++ QD+  GL+I       ++ V P PGAL+ N+GDI+ I++N+ Y S  HRV  N+S   R +I  FF     D +  P P L
Sbjct:  216 RKALVKYHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRV-CNNSGSDRYTIP-FFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CB304568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX2_ARATH7.903e-1528.14Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX3_ARATH3.003e-1434.65Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX7_ARATH8.737e-1439.64Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX3_ARATH2.811e-1228.85Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ISP7_SCHPO4.059e-1132.26Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304568 ID=CB304568; Name=CB304568; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACACTTGAATTGTTATTCTT
ACGTAAGAATAGTTTATACAGGCACAAACAACCAGATTTACCAAGTTTTG
TTTCTTACAGCCTATAGTAATTCACCAATGTTTTTCCATCTAACTGCTTT
GTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAACTGCCGAAAACGAGC
TGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCCATAAAGGCTGTCCC
TCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTCGTGGTTCCGGGGAC
GAATTAGCCAATACTCTATGCTCTACACTTATGTATTCATCATTGGACAT
AATCTGAAGTATATCCCCAATGTTAATAACCAGAGCTCCTGGAACTGGTT
TAACATCCACCCATTCCTCACCATGCTTAATTTGCAGCCCACCTTTATCA
TCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTATGAGATGTGATCCC
CACTGTCAGATCAGGCTGCGGACAGTAGGGATAATAATGGCCCACCATCA
TCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTATCGGTTTTCAACCCC
AAACCTTCACACAGCACCCCAAACAAAAGCTCTCCGAGCTGTTTTACATG
GTGGTTCCACTCGACTGCCTCTTTCCTACATATTTCAGGAACTTCTTTCA
GCTCTGGCTCCGTCAGACCTAGCCTTATCTGC
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