CB304579

Overview
NameCB304579
Unique NameCB304579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304579_ssr178 microsatellite CB304579_ssr178:178..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:503..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = -2
Query:  334 STATCVDIFLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 486
            S   C +IF+A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = -2
Query:  328 TCVDIF---LAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 477
            TC DIF   LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  328 VDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 471
            +++  A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -2
Query:  328 IFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 465
            I LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  334 MADGSTATCVDIFLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 498
            MA      C +I +A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = -2
Query:  334 TCVDI---FLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 477
            TC DI     AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
The following BLAST results are available for this feature:
BLAST of CB304579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RC22_ARATH3.023e-1261.54UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_CRYNE1.149e-1167.92Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
RC21_ARATH1.500e-1152.08UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
PMP3_GIBZE3.343e-1169.57Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH7.447e-1162.50UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
YCU3_CAEEL9.726e-1164.71UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304579 ID=CB304579; Name=CB304579; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGGACTTGTAATGATTC
ACAAGGGAATTTACACACTCAATAATACTCCACTTTACATCAACATATTG
AATTAAAATTCATTAAAAAGGACAAATGAAAGAAAAGAAAACGATAAAGA
TTAACAAACGAAACAAGTGCTCTCTCCCACACACACACGCACACCCCAGT
TGATTAAAAATCAAAACCCATCTGGCTACATCAAATCAAAGCTGCCCATC
TAACGGGTGTAAATAAAAGATCTCATAACACATGATGCCCTTGGGATCTC
TCAATAAATGAAGACGAAAGATCACTTCTTGGTGATGGCATAAACAGCAT
AAATAATTCCAGGGATATACCCCAAAATTGTCAAGAGCAAACAGATCCAA
AACTCAGCCTTGCAACCAAATTTGAGAAAGACACCAAGAGGAGGCAAGAT
AACAGCCAAGAAAATATCTACGCATGTTGCTGTGCTTCCATCTGCCATCT
TTGATTGATTCTTAAAAAGTGTAAAATGGAATAAAATAAAATTTAGAGTC
AAAAAACAAAAACTTTGATTA
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