CB304581

Overview
NameCB304581
Unique NameCB304581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BRUC2 (50S ribosomal protein L25 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 33/115 (28.70%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  339 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALKLFRSKDEPVCKIA 680
            +K++VLP+   L    D P +V FLR   ++++ ++VP+ F+ ++  PG+++GG LN ++  V+ + PA+ +P  +++DLS L++   +    +K+   A    + +D  +  IA
Sbjct:   71 KKIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATIA 185          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BRUAB (50S ribosomal protein L25 OS=Brucella abortus GN=rplY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 33/115 (28.70%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  339 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALKLFRSKDEPVCKIA 680
            +K++VLP+   L    D P +V FLR   ++++ ++VP+ F+ ++  PG+++GG LN ++  V+ + PA+ +P  +++DLS L++   +    +K+   A    + +D  +  IA
Sbjct:   71 KKIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATIA 185          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BRUA2 (50S ribosomal protein L25 OS=Brucella abortus (strain 2308) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 33/115 (28.70%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  339 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALKLFRSKDEPVCKIA 680
            +K++VLP+   L    D P +V FLR   ++++ ++VP+ F+ ++  PG+++GG LN ++  V+ + PA+ +P  +++DLS L++   +    +K+   A    + +D  +  IA
Sbjct:   71 KKIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATIA 185          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BRUA1 (50S ribosomal protein L25 OS=Brucella abortus (strain S19) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 33/115 (28.70%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  339 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALKLFRSKDEPVCKIA 680
            +K++VLP+   L    D P +V FLR   ++++ ++VP+ F+ ++  PG+++GG LN ++  V+ + PA+ +P  +++DLS L++   +    +K+   A    + +D  +  IA
Sbjct:   71 KKIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATIA 185          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BART1 (50S ribosomal protein L25 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 31/89 (34.83%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  414 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 680
            +K+ VLP+   L    D PL+V FLR   ++++++++P+ F  +D  PGL+KGG LN ++  ++   PA+ +P  I++DLS   +   I
Sbjct:   71 QKIMVLPKDYQLDPVRDFPLHVDFLRISAKSVVEVNIPVHFLNEDTAPGLKKGGVLNIVRHEIECTAPANAIPEAIEIDLSSYSIGDSI 159          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BARHE (50S ribosomal protein L25 OS=Bartonella henselae GN=rplY PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 31/89 (34.83%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  414 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 680
            +K+ VLP+   L    D PL+V FLR   ++++++++P+ F  +D  PGL+KGG LN ++  ++   PA+ +P  I++DLS   +   I
Sbjct:   71 QKIMVLPKDYQLDPVRDFPLHVDFLRISAKSIVEVNIPVHFLNEDSAPGLKKGGVLNIVRHEIECTAPANAIPEAIEIDLSSYSIGDSI 159          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BRAJA (50S ribosomal protein L25 OS=Bradyrhizobium japonicum GN=rplY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = -1
Query:  342 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKI 680
            +K RV+PR  HL    D P++V F+R    A ++I VPL     + +PG+++GG +N +   ++  C  + +P YI+ D+  L++   +   D+K+   +K    +D  +  I
Sbjct:   72 KKHRVIPRDYHLDPVKDFPIHVDFMRLGEGATIRISVPLHVVKSEASPGVKRGGTVNIVAHAIELECGVESIPQYIEADVGSLEIGHSLHLSDVKLPAGVKALTREDATLVTI 184          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_PARL1 (50S ribosomal protein L25 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = -1
Query:  393 RVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 671
            RV+PR V      D  ++V FLR    A + +DVP+ F   + +PG++ GG LN ++  V+ +CPAD +P  +D+DL+  ++   I    +K+
Sbjct:   74 RVIPRDVQFEPVRDFIIHVDFLRLGKNATVTVDVPVHFHNHEASPGIKAGGVLNIVRHEVELVCPADAIPEQLDIDLTGFEMGSSIHISAVKL 166          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_BARBK (50S ribosomal protein L25 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 29/89 (32.58%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  414 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 680
            EK++VLP+   L    D P++V FLR   ++++ +++P+ F  +D  PG+++GG LN ++  ++   PA+ +P  I +DLS   +   I
Sbjct:   71 EKIQVLPKDYQLDPVRDFPMHVDFLRVSAKSIVHVNIPVHFLNEDTAPGIKRGGVLNIVRHEIECTAPANAIPDAIQIDLSSYSIGDSI 159          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_AZOC5 (50S ribosomal protein L25 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = -1
Query:  342 KVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKI 677
            K RV+PR   L    D PL+V FLR    A + ++VP+ F   D  PGL+ GG LN +   V   CPA+ +P ++  DL+ L++   +    +K+   +    + D+ +  I
Sbjct:   72 KHRVIPRDYQLDPVKDLPLHVDFLRVSQGASVTVEVPVHFENQDKAPGLKSGGTLNVVAHAVALECPAEAIPDHVVADLTGLEIGDSLHLSKVKLPAGVSSAVTGDDTLATI 183          
The following BLAST results are available for this feature:
BLAST of CB304581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL25_BRUC22.494e-1228.7050S ribosomal protein L25 OS=Brucella canis (strai... [more]
RL25_BRUAB2.494e-1228.7050S ribosomal protein L25 OS=Brucella abortus GN=r... [more]
RL25_BRUA22.494e-1228.7050S ribosomal protein L25 OS=Brucella abortus (str... [more]
RL25_BRUA12.494e-1228.7050S ribosomal protein L25 OS=Brucella abortus (str... [more]
RL25_BART12.494e-1234.8350S ribosomal protein L25 OS=Bartonella tribocorum... [more]
RL25_BARHE3.258e-1234.8350S ribosomal protein L25 OS=Bartonella henselae G... [more]
RL25_BRAJA5.557e-1229.2050S ribosomal protein L25 OS=Bradyrhizobium japoni... [more]
RL25_PARL17.257e-1234.4150S ribosomal protein L25 OS=Parvibaculum lavament... [more]
RL25_BARBK7.257e-1232.5850S ribosomal protein L25 OS=Bartonella bacillifor... [more]
RL25_AZOC57.257e-1232.1450S ribosomal protein L25 OS=Azorhizobium caulinod... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304581 ID=CB304581; Name=CB304581; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAGTAAAAAATAATCAC
TAACTGGATTAATGAGGTACACTCTTAATCGGAATCTGCTCCGCTTAACC
ACAAACCCACTGCAGCCTATTCAAATGGGATAAAAAAAAATGATGGTTGG
AGAGATAAAACTAAATTCGCAATTCCTAATCTGGTATTACAAAATTATGA
CTGTGTGATGAAAAAATGGGACCTCACATCTTCATATACTCATAGTCCGG
TTAAACCTGGAGATTGATTCATTAACCATAGTTTCAAGAATTGCTGAGGT
ACTTATTTTGATTTCTTTTGATCAAAAACCCTGCCTCCCGCAATCTTACA
GACAGGCTCGTCCTTTGACCGAAAAAGCTTTAATGCTGGATGAACCTTGA
GGTCTCCTGCTAAAATTTTCTGTTCCACATCCAACTCACTCAAATCGACA
TCAATATACGGAGGGACAATGTCTGCTGGACAAAGGAACTTAACAGTCCT
CTTGATAGTATTCAAATAACCCCCTTTTCTTAGACCAGGGGTCACATCAT
CTCCTCTAAAGACAAGTGGAACATCAATCTTCAGCAAAGCTTCTGGAGGT
GCCCTTAAGAAGGTCACATTAAGTGGTGCATCCGTGCCAGAAGGTAGATG
TACCTTTCTGGGCAGGACCCGGACTTTTTCAAT
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