CB304582

Overview
NameCB304582
Unique NameCB304582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304582_ssr161 microsatellite CB304582_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:247..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+ DC RV
Sbjct:   66 AARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS S +C  V+
Sbjct:   63 AANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS + +C  V+
Sbjct:   63 AANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS S DC RV
Sbjct:   68 AARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPS DC  V+
Sbjct:   66 AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS S +C  +R
Sbjct:   63 AARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPS DC  V+
Sbjct:   62 AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = -3
Query:  237 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDC 389
            AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPS +C
Sbjct:   63 AAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNC 113          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPS DC RV
Sbjct:   65 AAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.328e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = -3
Query:  237 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDC 389
            ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS S +C
Sbjct:   37 SSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNC 87          
The following BLAST results are available for this feature:
BLAST of CB304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLTP_DAUCA6.125e-1359.26Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP6_LENCU6.125e-1363.64Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU8.000e-1361.82Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP2_SORBI1.045e-1264.81Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP2_GOSHI1.045e-1261.82Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_LENCU1.045e-1260.00Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP1_GOSHI1.045e-1261.82Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_SPIOL1.365e-1264.71Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP4_ORYSJ1.782e-1257.41Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_PHAAU2.328e-1260.78Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304582 ID=CB304582; Name=CB304582; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCACTCAAAACACAGAT
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGGGAAACTCATACAAGGGGAGACTCGTTCGGACAAAGAAATTAAC
ATAAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGGGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGC
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