CB304582

Overview
NameCB304582
Unique NameCB304582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304582_ssr161 microsatellite CB304582_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:247..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.040e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPS +C  V+
Sbjct:   64 AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.040e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS S +C  V+
Sbjct:   62 AANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS S DC RV
Sbjct:   66 AARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS S +C  +R
Sbjct:   61 AAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPS DC  V+
Sbjct:   60 AAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            +A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPS DC  V+
Sbjct:   60 SAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            +A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPS DC  V+
Sbjct:   60 SAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPS DC +V+
Sbjct:   60 AAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   64 AARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   64 AASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CB304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLTP_PRUAV3.040e-1255.56Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP5_LENCU3.040e-1260.00Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_MAIZE3.970e-1261.11Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_CICAR3.970e-1261.82Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SOLLC3.970e-1260.00Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_SOLPN3.970e-1260.00Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_SOLLC3.970e-1260.00Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_TOBAC6.772e-1258.18Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SORBI6.772e-1261.11Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI1.155e-1159.26Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304582 ID=CB304582; Name=CB304582; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCACTCAAAACACAGAT
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGGGAAACTCATACAAGGGGAGACTCGTTCGGACAAAGAAATTAAC
ATAAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGGGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGC
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