CB304582

Overview
NameCB304582
Unique NameCB304582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304582_ssr161 microsatellite CB304582_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:247..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   63 AATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   64 AASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 34/55 (61.82%), Postives = 36/55 (65.45%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   66 AARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS + +C  ++
Sbjct:   63 AAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPS +C +V
Sbjct:   37 SATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPS DC +V+
Sbjct:   61 AQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   62 AASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = -3
Query:  228 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRV 389
            AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   62 AASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSPDCFRVR 386
            A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPS DC  ++
Sbjct:   68 AQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS S +C  ++
Sbjct:   62 AKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
The following BLAST results are available for this feature:
BLAST of CB304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLT2B_ORYSJ1.155e-1159.26Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.155e-1159.26Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP6_GOSHI1.970e-1161.82Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_LENCU2.573e-1156.36Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_VITSX7.488e-1157.41Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP2_SOLPN7.488e-1157.41Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_ORYSJ7.488e-1157.41Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI7.488e-1157.41Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP3_PRUDU9.779e-1157.14Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_ARATH9.779e-1150.00Non-specific lipid-transfer protein 3 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304582 ID=CB304582; Name=CB304582; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCACTCAAAACACAGAT
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGGGAAACTCATACAAGGGGAGACTCGTTCGGACAAAGAAATTAAC
ATAAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGGGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGC
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